SS1G_04219 (Sclerotinia sclerotiorum)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 SS1G_04219 T01640_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SS1T_04219 CCCH ZF 283 306
SS1T_04219 CCCH ZF 310 331

Links

Other CCCH ZF family RBPs
Other Sclerotinia sclerotiorum RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ARB_00116 Arthroderma benhamiae ARB_00116 N 0.809
estExt_Genewise1.C_290124 Neurospora tetrasperma estExt_Genewise1.C_290124 N 0.848
e_gw1.5.87.1 Trichoderma reesei e_gw1.5.87.1 N 0.812
NCU07418 Neurospora crassa NCU07418 N 0.848
NFIA_103330 Neosartorya fischeri CADNFIAG00010242 N 0.830
ATEG_03185 Aspergillus terreus CADATEAG00008323 N 0.851
AO090009000286 Aspergillus oryzae CADAORAG00003756 N 0.851
ANIA_03578 Aspergillus nidulans CADANIAG00005166 N 0.833
An01g08600 Aspergillus niger CADANGAG00000860 N 0.851
estExt_Genewise1Plus.C_13473 Trichoderma atroviride estExt_Genewise1Plus.C_13473 N 0.833
estExt_Genewise1Plus.C_40825 Neurospora discreta estExt_Genewise1Plus.C_40825 N 0.848
Pc22g02970 Penicillium chrysogenum Pc22g02970 N 0.816
Pa_1_10420 Podospora anserina Pa_1_10420 N 0.851
GSTUMT00011195001 Tuber melanosporum GSTUMT00011195001 N 0.857
fgenesh1_pm.00009_#_468 Aspergillus carbonarius fgenesh1_pm.00009_#_468 N 0.851
e_gw1.6.94.1 Cryphonectria parasitica e_gw1.6.94.1 N 0.723
fgenesh2_pm.1_#_1003 Thielavia terrestris fgenesh2_pm.1_#_1003 N 0.851
fgenesh1_pm.sca_3_chr4_2_0000335 Nectria haematococca fgenesh1_pm.sca_3_chr4_2_0000335 N 0.833
fgenesh1_pg.C_scaffold_7000377 Trichoderma virens fgenesh1_pg.C_scaffold_7000377 N 0.833
AFUA_4G13020 Aspergillus fumigatus CADAFUAG00007954 N 0.830
AFLA_051800 Aspergillus flavus CADAFLAG00011171 N 0.851
GLRG_01552 Colletotrichum graminicola GLRG_01552 N 0.872
FVEG_05147 Fusarium verticillioides FVEG_05147 N 0.812
FOXG_01987 Fusarium oxysporum FOXG_01987 N 0.812
FGSG_12995 Fusarium graminearum FGSG_12995 N 0.833
CPSG_09242 Coccidioides posadasii CPSG_09242 N 0.851
CIMG_00632 Coccidioides immitis CIMG_00632 N 0.851
BDBG_02229 Blastomyces dermatitidis BDBG_02229 N 0.787
BC1G_00189 Botrytis cinerea BC1G_00189 N 1.000
HCAG_07022 Histoplasma capsulatum HCAG_07022 N 0.809
MCYG_01086 Microsporum canis MCYG_01086 N 0.787
ACLA_052020 Aspergillus clavatus CADACLAG00005073 N 0.851
VDAG_04286 Verticillium dahliae VDAG_04286 N 0.851
UREG_00636 Uncinocarpus reesii UREG_00636 N 0.851
TRV_06656 Trichophyton verrucosum TRV_06656 N 0.809
TERG_07499 Trichophyton rubrum TERG_07499 N 0.809
PABG_03020 Paracoccidioides brasiliensis PABG_03020 N 0.745
MGYG_01632 Microsporum gypseum MGYG_01632 N 0.787
MGG_04405 Magnaporthe oryzae MGG_04405 N 0.783
PMAA_081480 Penicillium marneffei PMAA_081480 N 0.830