fgenesh1_pm.sca_3_chr4_2_0000335 (Nectria haematococca)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh1_pm.sca_3_chr4_2_0000335 T05275_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.sca_3_chr4_2_0000335 CCCH ZF 285 309
fgenesh1_pm.sca_3_chr4_2_0000335 CCCH ZF 312 334

Links

Other CCCH ZF family RBPs
Other Nectria haematococca RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FGSG_12995 Fusarium graminearum FGSG_12995 N 1.000
estExt_Genewise1Plus.C_13473 Trichoderma atroviride estExt_Genewise1Plus.C_13473 N 0.979
FOXG_01987 Fusarium oxysporum FOXG_01987 N 0.979
FVEG_05147 Fusarium verticillioides FVEG_05147 N 0.979
fgenesh1_pg.C_scaffold_7000377 Trichoderma virens fgenesh1_pg.C_scaffold_7000377 N 0.979
e_gw1.5.87.1 Trichoderma reesei e_gw1.5.87.1 N 0.958
GLRG_01552 Colletotrichum graminicola GLRG_01552 N 0.958
VDAG_04286 Verticillium dahliae VDAG_04286 N 0.938
fgenesh2_pm.1_#_1003 Thielavia terrestris fgenesh2_pm.1_#_1003 N 0.854
Pa_1_10420 Podospora anserina Pa_1_10420 N 0.854
SS1G_04219 Sclerotinia sclerotiorum SS1G_04219 N 0.833
ANIA_03578 Aspergillus nidulans CADANIAG00005166 N 0.833
BC1G_00189 Botrytis cinerea BC1G_00189 N 0.833
NCU07418 Neurospora crassa NCU07418 N 0.812
AFLA_051800 Aspergillus flavus CADAFLAG00011171 N 0.812
ATEG_03185 Aspergillus terreus CADATEAG00008323 N 0.812
estExt_Genewise1Plus.C_40825 Neurospora discreta estExt_Genewise1Plus.C_40825 N 0.812
AO090009000286 Aspergillus oryzae CADAORAG00003756 N 0.812
An01g08600 Aspergillus niger CADANGAG00000860 N 0.812
fgenesh1_pm.00009_#_468 Aspergillus carbonarius fgenesh1_pm.00009_#_468 N 0.812
estExt_Genewise1.C_290124 Neurospora tetrasperma estExt_Genewise1.C_290124 N 0.812
Pc22g02970 Penicillium chrysogenum Pc22g02970 N 0.796
ACLA_052020 Aspergillus clavatus CADACLAG00005073 N 0.792
GSTUMT00011195001 Tuber melanosporum GSTUMT00011195001 N 0.780
AFUA_4G13020 Aspergillus fumigatus CADAFUAG00007954 N 0.771
MGG_04405 Magnaporthe oryzae MGG_04405 N 0.771
CIMG_00632 Coccidioides immitis CIMG_00632 N 0.771
CPSG_09242 Coccidioides posadasii CPSG_09242 N 0.771
e_gw1.6.94.1 Cryphonectria parasitica e_gw1.6.94.1 N 0.771
NFIA_103330 Neosartorya fischeri CADNFIAG00010242 N 0.771
UREG_00636 Uncinocarpus reesii UREG_00636 N 0.771
MGYG_01632 Microsporum gypseum MGYG_01632 N 0.750
MCYG_01086 Microsporum canis MCYG_01086 N 0.750
ARB_00116 Arthroderma benhamiae ARB_00116 N 0.729
PMAA_081480 Penicillium marneffei PMAA_081480 N 0.729
BDBG_02229 Blastomyces dermatitidis BDBG_02229 N 0.729
HCAG_07022 Histoplasma capsulatum HCAG_07022 N 0.729
PABG_03020 Paracoccidioides brasiliensis PABG_03020 N 0.729
TRV_06656 Trichophyton verrucosum TRV_06656 N 0.729
TERG_07499 Trichophyton rubrum TERG_07499 N 0.729