CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NFIA_073040
(
Neosartorya fischeri
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CADNFIAG00007899
T02094_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADNFIAP00007732
CCCH ZF
86
111
PKTVLCVFYKQGNCEKGKKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Neosartorya fischeri
RBPs
133 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
etr-1
Caenorhabditis elegans
T01D1.2
D
0.000
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.000
LOAG_01549
Loa loa
LOAG_01549
I
0.000
GI17947
Drosophila mojavensis
FBgn0140687
I
0.000
GM26796
Drosophila sechellia
FBgn0181649
I
0.000
GD23834
Drosophila simulans
FBgn0195204
I
0.000
ISCW008885
Ixodes scapularis
ISCW008885
I
0.000
ISCW010799
Ixodes scapularis
ISCW010799
I
0.000
Ppa-etr-1
Pristionchus pacificus
PPA28330
I
0.000
SNAPOd2T00007754001
Oikopleura dioica
SNAPOd2T00007754001
I
0.000
136083
Helobdella robusta
136083
I
0.000
GG23781
Drosophila erecta
FBgn0115920
I
0.000
GF19661
Drosophila ananassae
FBgn0096668
I
0.000
WUBG_02225
Wuchereria bancrofti
WUBG_02225
I
0.000
WUBG_04928
Wuchereria bancrofti
WUBG_04928
I
0.000
amel4_ncbi_hmm2201
Apis mellifera
amel4_ncbi_hmm2201
I
0.000
CBG06972
Caenorhabditis briggsae
CBG06972
I
0.000
CBN02786
Caenorhabditis brenneri
CBN02786
I
0.000
CRE18292
Caenorhabditis remanei
CRE18292
I
0.000
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.000
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.000
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.000
e_gw.982.9.1
Nematostella vectensis
e_gw.982.9.1
I
0.000