cassava36564.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava36564.valid.m1 T04801_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava36564.valid.m1 CCCH ZF 324 346

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK16552.1 Cannabis sativa PK16552.1 N 0.000
fgenesh1_pg.C_scaffold_3000233 Neurospora tetrasperma fgenesh1_pg.C_scaffold_3000233 N 0.000
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.000
Glyma10g28100.1 Glycine max Glyma10g28100.1 N 0.000
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.000
Glyma20g22120.1 Glycine max Glyma20g22120.1 N 0.000
mgf008200m Mimulus guttatus mgf008200m N 0.000
mgf012653m Mimulus guttatus mgf012653m N 0.000
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.000
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.000
Medtr1g103590 Medicago truncatula Medtr1g103590 N 0.000
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.000
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.000
estExt_fgenesh2_pg.C_50170 Neurospora discreta estExt_fgenesh2_pg.C_50170 N 0.000
estExtDG_fgeneshEH_pg.C_710018 Emiliania huxleyi estExtDG_fgeneshEH_pg.C_710018 N 0.000
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.000
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.000
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.000
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.000
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.000
NCU00483 Neurospora crassa NCU00483 N 0.000
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.000
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.000
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.000
30128.m009003 Ricinus communis 30128.m009003 N 0.000
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.000
estExtDG_fgeneshEH_pg.C_1020080 Emiliania huxleyi estExtDG_fgeneshEH_pg.C_1020080 N 0.000
ppa001778m Prunus persica ppa001778m N 0.000