BGIOSIBCE013536 (Oryza indica)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 BGIOSIBCE013536 T09447_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE013536 CCHC ZF 761 778

Links

Other CCHC ZF family RBPs
Other Oryza indica RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK16552.1 Cannabis sativa PK16552.1 N 0.778
estExtDG_fgeneshEH_pg.C_710018 Emiliania huxleyi estExtDG_fgeneshEH_pg.C_710018 N 0.722
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.944
Glyma10g28100.1 Glycine max Glyma10g28100.1 N 0.778
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 1.000
Glyma20g22120.1 Glycine max Glyma20g22120.1 N 0.778
mgf008200m Mimulus guttatus mgf008200m N 0.833
mgf012653m Mimulus guttatus mgf012653m N 0.778
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.944
GRMZM2G415491 Zea mays GRMZM2G415491 N 1.000
Medtr1g103590 Medicago truncatula Medtr1g103590 N 0.833
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.889
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.944
estExtDG_fgeneshEH_pg.C_1020080 Emiliania huxleyi estExtDG_fgeneshEH_pg.C_1020080 N 0.722
Cucsa.051030 Cucumis sativus Cucsa.051030 N 0.722
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.722
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.889
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.722
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.778
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 1.000
LOC_Os08g14290 Oryza sativa LOC_Os08g14290 N 0.778
LOC_Os11g20220 Oryza sativa LOC_Os11g20220 N 0.722
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.833
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.833
Sb01g002660 Sorghum bicolor Sb01g002660 N 1.000
30128.m009003 Ricinus communis 30128.m009003 N 0.889
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.889
ppa001778m Prunus persica ppa001778m N 0.778