SOCG_03680 (Schizosaccharomyces octosporus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SOCG_03680 T30704_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SOCG_03680T0 RRM 93 163

Links

Other RRM family RBPs
Other Schizosaccharomyces octosporus RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH72210 Xenopus laevis AAH72210 N 0.000
estExt_Genewise1.C_20589 Coccomyxa C 169 estExt_Genewise1.C_20589 N 0.000
estExt_fgenesh2_kg.C_20554 Agaricus bisporus estExt_fgenesh2_kg.C_20554 N 0.000
e_gw1.7.291.1 Tremella mesenterica e_gw1.7.291.1 N 0.000
EDP43963.1 Malassezia globosa EDP43963.1 N 0.000
2380_YCL059C Saccharomyces bayanus 2380_YCL059C N 0.000
2245_YCL059C Saccharomyces mikatae 2245_YCL059C N 0.000
2217_YCL059C Saccharomyces paradoxus 2217_YCL059C N 0.000
Skud_Contig2065.14 Saccharomyces kudriavzevii Skud_Contig2065.14 N 0.000
PredSwiss_ASS2010_156.1 Pneumocystis carinii PredSwiss_ASS2010_156.1 N 0.000
pasa_Sanger_mRNA6968 Chlamydomonas reinhardtii pasa_Sanger_mRNA6968 N 0.000
PASA_GEN_0400107 Daphnia pulex PASA_GEN_0400107 N 0.000
estExt_Genewise1Plus.C_20668 Chlorella vulgaris estExt_Genewise1Plus.C_20668 N 0.000
fgenesh1_pm.00866_#_279 Aspergillus carbonarius fgenesh1_pm.00866_#_279 N 0.000
fgenesh1_pm.C_scaffold_4000135 Pleurotus ostreatus fgenesh1_pm.C_scaffold_4000135 N 0.000
AAH41273 Xenopus laevis AAH41273 N 0.000
SAKL0C00484g Lachancea kluyveri SAKL0C00484g N 0.000
PMAA_048600 Penicillium marneffei PMAA_048600 N 0.000
Pc15g00270 Penicillium chrysogenum Pc15g00270 N 0.000
Pa_1_24010 Podospora anserina Pa_1_24010 N 0.000
Kwal_13011 Kluyveromyces waltii Kwal_13011 N 0.000
KLLA0C00506g Kluyveromyces lactis KLLA0C00506g N 0.000
gw1.3.2120.1 Cryphonectria parasitica gw1.3.2120.1 N 0.000
GSTUMT00008009001 Tuber melanosporum GSTUMT00008009001 N 0.000
Genemark.4150_g Heterobasidion annosum Genemark.4150_g N 0.000
fgenesh2_kg.4_#_366_#_2882_1_CFPN Serpula lacrymans fgenesh2_kg.4_#_366_#_2882_1_CFPN N 0.000
eu2.Lbscf0025g00750 Laccaria bicolor eu2.Lbscf0025g00750 N 0.000
estExt_Genewise1Plus.C_250151 Melampsora laricis populina estExt_Genewise1Plus.C_250151 N 0.000
KRR1 Oryzias latipes ENSORLG00000019616 N 0.000
ATEG_01441 Aspergillus terreus CADATEAG00000360 N 0.000
ANIA_05875 Aspergillus nidulans CADANIAG00007161 N 0.000
PGUG_03304 Candida guilliermondii PGUG_03304 N 0.000
GLRG_02756 Colletotrichum graminicola GLRG_02756 N 0.000
FVEG_06170 Fusarium verticillioides FVEG_06170 N 0.000
FGSG_06203 Fusarium graminearum FGSG_06203 N 0.000
DEHA0E14685g Debaryomyces hansenii DEHA0E14685g N 0.000
CPAG_00706 Candida parapsilosis CPAG_00706 N 0.000
CNBG_5932 Cryptococcus neoformans CNBG_5932 N 0.000
CLUG_04903 Candida lusitaniae CLUG_04903 N 0.000
NCU07041 Neurospora crassa NCU07041 N 0.000
KRR1 Saccharomyces cerevisiae YCL059C N 0.000
e_gw1.11.691.1 Mycosphaerella fijiensis e_gw1.11.691.1 N 0.000
estExt_Genewise1Plus.C_20041 Sporobolomyces roseus estExt_Genewise1Plus.C_20041 N 0.000
estExt_Genewise1Plus.C_120457 Neurospora discreta estExt_Genewise1Plus.C_120457 N 0.000
estExt_Genewise1.C_80450 Myceliophthora thermophila estExt_Genewise1.C_80450 N 0.000
estExt_Genewise1.C_250056 Neurospora tetrasperma estExt_Genewise1.C_250056 N 0.000
estExt_fgenesh3_pm.C_180006 Postia placenta estExt_fgenesh3_pm.C_180006 N 0.000
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.000
estExt_fgenesh2_pm.C_40064 Thielavia terrestris estExt_fgenesh2_pm.C_40064 N 0.000
estExt_fgenesh1_pg.C_chr_50346 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_50346 N 0.000
estExt_fgenesh1_pg.C_70293 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_70293 N 0.000
e_gwh2.2.654.1 Phanerochaete chrysosporium e_gwh2.2.654.1 N 0.000
e_gw1.1.3483.1 Schizophyllum commune e_gw1.1.3483.1 N 0.000
BDBG_00628 Blastomyces dermatitidis BDBG_00628 N 0.000