nasonia_NCBI_hmm916274 (Nasonia vitripennis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 nasonia_NCBI_hmm916274 T32297_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb87F
M029_0.6 		Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00029 		0.757
Hrb98DE
M093_0.6 		Drosophila melanogaster RGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00096 		0.736
Hrb98DE
M092_0.6 		Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00095 		0.736
Hrb98DE
M091_0.6 		Drosophila melanogaster GKUAGGK RNAcompete
Ray et al.(2013)
RNCMPT00094 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
nasonia_NCBI_hmm916274 RRM 19 88
nasonia_NCBI_hmm916274 RRM 110 179

Links

Other RRM family RBPs
Other Nasonia vitripennis RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.000
RBM42 Homo sapiens ENSG00000126254 D 0.000
AAI29698 Xenopus laevis AAI29698 I 0.000
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.000
RBM42 Sus scrofa ENSSSCG00000002905 I 0.000
RBM42 Sorex araneus ENSSARG00000010724 I 0.000
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.000
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.000
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.000
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.000
RBM42 Procavia capensis ENSPCAG00000013053 I 0.000
RBM42 Oryzias latipes ENSORLG00000003387 I 0.000
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.000
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.000
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.000
A2VDB3 Xenopus laevis A2VDB3 I 0.000
XP_002167334.1 Hydra magnipapillata XP_002167334.1 I 0.000
Minc13155 Meloidogyne incognita Minc13155 I 0.000
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.000
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.000
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.000
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.000
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.000
tag-262 Caenorhabditis elegans Y54H5A.3 I 0.000
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.000
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.000
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.000
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.000
RBM42 Canis familiaris ENSCAFG00000006925 I 0.000
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.000
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.000
CRE29329 Caenorhabditis remanei CRE29329 I 0.000
CJA09414 Caenorhabditis japonica CJA09414 I 0.000
CBN12017 Caenorhabditis brenneri CBN12017 I 0.000
CBG21313 Caenorhabditis briggsae CBG21313 I 0.000
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.000
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.000
LOAG_04208 Loa loa LOAG_04208 I 0.000
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.000
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.000
rbm42 Danio rerio ENSDARG00000039910 I 0.000
Rbm42 Mus musculus ENSMUSG00000036733 I 0.000
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.000
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.000
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.000
RBM42 Microcebus murinus ENSMICG00000009880 I 0.000
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.000
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.000
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.000
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.000
LOC100051102 Equus caballus ENSECAG00000018215 I 0.000
Bm1_40380 Brugia malayi Bm1_40380 I 0.000
estExt_fgenesh2_pg.C_90157 Monosiga brevicollis estExt_fgenesh2_pg.C_90157 N 0.000