Hrb87F (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0004237 T42995_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb87F
M029_0.6		 Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00029 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb98DE
M093_0.6 		Drosophila melanogaster RGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00096 		0.771
Hrb98DE
M092_0.6 		Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00095 		0.771
Hrb98DE
M091_0.6 		Drosophila melanogaster GKUAGGK RNAcompete
Ray et al.(2013)
RNCMPT00094 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M029_0.6 RRM 26 95
M029_0.6 RRM 117 186

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0082316 RRM 26 95
FBpp0082316 RRM 117 186
FBpp0082317 RRM 26 95
FBpp0082317 RRM 117 186
FBpp0289817 RRM 26 95
FBpp0289817 RRM 117 186

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GM25918 Drosophila sechellia FBgn0180774 I 0.993
GA26465-RA Drosophila pseudoobscura FBgn0247839 I 0.979
GI10692 Drosophila mojavensis FBgn0133456 I 0.971
GH19058 Drosophila grimshawi FBgn0126525 I 0.971
GJ23111 Drosophila virilis FBgn0210213 I 0.971
GG17033 Drosophila erecta FBgn0109261 I 0.971
GK13334 Drosophila willistoni FBgn0215343 I 0.964
GF17368 Drosophila ananassae FBgn0094386 I 0.964
GE24426 Drosophila yakuba FBgn0241543 I 0.957
AGAP002374 Anopheles gambiae AGAP002374 I 0.807
GF18582 Drosophila ananassae FBgn0095600 I 0.786
AAEL010467 Aedes aegypti AAEL010467 I 0.786
GL13791 Drosophila persimilis FBgn0151396 I 0.786
GA26796-RA Drosophila pseudoobscura FBgn0248169 I 0.786
GE23791 Drosophila yakuba FBgn0240946 I 0.779
GG11603 Drosophila erecta FBgn0103900 I 0.779
GM16385 Drosophila sechellia FBgn0171300 I 0.771
GI10577 Drosophila mojavensis FBgn0133341 I 0.771
CPIJ001612 Culex quinquefasciatus CPIJ001612 I 0.771
Hrb98DE Drosophila melanogaster FBgn0001215 D 0.771
GK12096 Drosophila willistoni FBgn0214107 I 0.771
CpipJ_CPIJ001612 Culex pipiens CpipJ_CPIJ001612 I 0.771
GH17116 Drosophila grimshawi FBgn0124586 I 0.771
GJ22934 Drosophila virilis FBgn0210037 I 0.771
GD21374 Drosophila simulans FBgn0192810 I 0.771
nasonia_NCBI_hmm916274 Nasonia vitripennis nasonia_NCBI_hmm916274 I 0.757
amel4_ncbi_hmm27519 Apis mellifera amel4_ncbi_hmm27519 I 0.750
BGIBMGA006405 Bombyx mori BGIBMGA006405 I 0.700