Hrb98DE (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0001215 T42988_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb98DE
M091_0.6		 Drosophila melanogaster GKUAGGK RNAcompete
Ray et al.(2013)
RNCMPT00094 		(Direct)
Hrb98DE
M092_0.6		 Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00095 		(Direct)
Hrb98DE
M093_0.6		 Drosophila melanogaster RGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00096 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb87F
M029_0.6 		Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00029 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M091_0.6 RRM 33 102
M091_0.6 RRM 124 193
M092_0.6 RRM 16 85
M092_0.6 RRM 107 176
M093_0.6 RRM 16 85
M093_0.6 RRM 107 176

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0084667 RRM 32 101
FBpp0084667 RRM 123 192
FBpp0084668 RRM 28 97
FBpp0084668 RRM 119 188
FBpp0084669 RRM 33 102
FBpp0084669 RRM 124 193
FBpp0084670 RRM 33 102
FBpp0084670 RRM 124 193
FBpp0084671 RRM 29 98
FBpp0084671 RRM 120 189
FBpp0084672 RRM 29 98
FBpp0084672 RRM 120 189

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GM16385 Drosophila sechellia FBgn0171300 I 0.993
GD21374 Drosophila simulans FBgn0192810 I 0.993
GE23791 Drosophila yakuba FBgn0240946 I 0.986
GG11603 Drosophila erecta FBgn0103900 I 0.986
GF18582 Drosophila ananassae FBgn0095600 I 0.971
GL13791 Drosophila persimilis FBgn0151396 I 0.950
GI10577 Drosophila mojavensis FBgn0133341 I 0.950
GA26796-RA Drosophila pseudoobscura FBgn0248169 I 0.950
GK12096 Drosophila willistoni FBgn0214107 I 0.943
GH17116 Drosophila grimshawi FBgn0124586 I 0.943
GJ22934 Drosophila virilis FBgn0210037 I 0.943
GK13334 Drosophila willistoni FBgn0215343 I 0.786
GE24426 Drosophila yakuba FBgn0241543 I 0.779
GJ23111 Drosophila virilis FBgn0210213 I 0.779
GH19058 Drosophila grimshawi FBgn0126525 I 0.779
GI10692 Drosophila mojavensis FBgn0133456 I 0.779
GF17368 Drosophila ananassae FBgn0094386 I 0.779
GM25918 Drosophila sechellia FBgn0180774 I 0.779
Hrb87F Drosophila melanogaster FBgn0004237 D 0.771
GG17033 Drosophila erecta FBgn0109261 I 0.771
GA26465-RA Drosophila pseudoobscura FBgn0247839 I 0.771
AAEL010467 Aedes aegypti AAEL010467 I 0.750
amel4_ncbi_hmm27519 Apis mellifera amel4_ncbi_hmm27519 I 0.750
CpipJ_CPIJ001612 Culex pipiens CpipJ_CPIJ001612 I 0.743
CPIJ001612 Culex quinquefasciatus CPIJ001612 I 0.743
nasonia_NCBI_hmm916274 Nasonia vitripennis nasonia_NCBI_hmm916274 I 0.736
AGAP002374 Anopheles gambiae AGAP002374 I 0.729