CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Q5BIS2_BOVIN
(
Bos taurus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSBTAG00000017919
T34895_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
1.000
e_gw.71.47.1
M233_0.6
Nematostella vectensis
AGAYASA
RNAcompete
Ray et al.(2013)
RNCMPT00278
0.766
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.727
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000023825
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSBTAP00000051668
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
Links
Other
RRM
family RBPs
Other
Bos taurus
RBPs
69 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRUNOL5
Homo sapiens
ENSG00000161082
D
0.000
CELF5
Bos taurus
ENSBTAG00000021774
I
0.000
CELF5
Oryzias latipes
ENSORLG00000004600
I
0.000
CELF4
Oryzias latipes
ENSORLG00000008913
I
0.000
CELF5
Procavia capensis
ENSPCAG00000002170
I
0.000
CELF5
Pteropus vampyrus
ENSPVAG00000014619
I
0.000
CELF5
Sus scrofa
ENSSSCG00000013476
I
0.000
BRUNOL5
Taeniopygia guttata
ENSTGUG00000000514
I
0.000
CELF3
Tetraodon nigroviridis
ENSTNIG00000008062
I
0.000
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.000
CELF4
Takifugu rubripes
ENSTRUG00000015481
I
0.000
CELF5
Tursiops truncatus
ENSTTRG00000009625
I
0.000
celf4
Xenopus tropicalis
ENSXETG00000020486
I
0.000
Ame_R011948
Ailuropoda melanoleuca
Ame_R011948
I
0.000
AAH46942
Xenopus laevis
AAH46942
I
0.000
CELF5
Otolemur garnettii
ENSOGAG00000014161
I
0.000
CELF4
Oryctolagus cuniculus
ENSOCUG00000024790
I
0.000
CELF5
Canis familiaris
ENSCAFG00000019263
I
0.000
CELF6
Cavia porcellus
ENSCPOG00000025842
I
0.000
celf5
Danio rerio
ENSDARG00000071375
I
0.000
Celf5
Dipodomys ordii
ENSDORG00000005915
I
0.000
CELF5
Echinops telfairi
ENSETEG00000016221
I
0.000
CELF3
Homo sapiens
ENSG00000159409
I
0.000
CELF3
Gasterosteus aculeatus
ENSGACG00000011707
I
0.000
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.000
CELF5
Meleagris gallopavo
ENSMGAG00000001169
I
0.000
CELF3
Macaca mulatta
ENSMMUG00000016952
I
0.000
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.000
Celf4
Mus musculus
ENSMUSG00000024268
I
0.000
Q7ZWM3
Xenopus laevis
Q7ZWM3
I
0.000
CELF3
Microcebus murinus
ENSMICG00000010644
N
0.000