zgc:63566 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000007639 T36047_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		1.000
e_gw.71.47.1
M233_0.6 		Nematostella vectensis AGAYASA RNAcompete
Ray et al.(2013)
RNCMPT00278 		0.766
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000016859 RRM 111 187

Links

Other RRM family RBPs
Other Danio rerio RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cnot4 Drosophila melanogaster FBgn0051716 D 0.727
CNOT4 Homo sapiens ENSG00000080802 D 1.000
e_gw.71.47.1 Nematostella vectensis e_gw.71.47.1 D 0.766
AAH44088 Xenopus laevis AAH44088 I 1.000
cnot4 Xenopus tropicalis ENSXETG00000010594 I 1.000
CNOT4 Tursiops truncatus ENSTTRG00000005122 I 1.000
CNOT4 Tarsius syrichta ENSTSYG00000000893 I 1.000
CNOT4 Takifugu rubripes ENSTRUG00000016861 I 0.987
CNOT4 Tetraodon nigroviridis ENSTNIG00000016000 I 0.987
CNOT4 Taeniopygia guttata ENSTGUG00000009161 I 1.000
CNOT4 Tupaia belangeri ENSTBEG00000002202 I 1.000
CNOT4 Sorex araneus ENSSARG00000009778 I 0.987
Cnot4 Rattus norvegicus ENSRNOG00000010795 I 1.000
CNOT4 Pteropus vampyrus ENSPVAG00000004905 I 1.000
CNOT4 Pan troglodytes ENSPTRG00000019727 I 1.000
ENSPPYG00000018026 Pongo pygmaeus ENSPPYG00000018026 I 1.000
GF15780 Drosophila ananassae FBgn0092804 I 0.727
GG10123 Drosophila erecta FBgn0102434 I 0.727
GH13370 Drosophila grimshawi FBgn0120846 I 0.727
XP_780160.2 Strongylocentrotus purpuratus XP_780160.2 I 0.810
XP_001179227.1 Strongylocentrotus purpuratus XP_001179227.1 I 0.810
Ame_R016242 Ailuropoda melanoleuca Ame_R016242 I 1.000
NCBI_GNO_5300025 Daphnia pulex NCBI_GNO_5300025 I 0.870
estExt_fgenesh1_pg.C_960014 Capitella teleta estExt_fgenesh1_pg.C_960014 I 0.857
e_gw1.25.349.1 Lottia gigantea e_gw1.25.349.1 I 0.785
Aqu1.226432 Amphimedon queenslandica Aqu1.226432 I 0.714
111136 Helobdella robusta 111136 I 0.844
PHUM247100 Pediculus humanus PHUM247100 I 0.740
GE18937 Drosophila yakuba FBgn0236309 I 0.727
GK18552 Drosophila willistoni FBgn0220550 I 0.727
GJ21812 Drosophila virilis FBgn0208930 I 0.727
GD23693 Drosophila simulans FBgn0195070 I 0.727
GI18285 Drosophila mojavensis FBgn0141024 I 0.727
CNOT4 Oryzias latipes ENSORLG00000003727 I 0.987
CNOT4 Ochotona princeps ENSOPRG00000001023 I 0.766
CNOT4 Oryctolagus cuniculus ENSOCUG00000013448 I 1.000
CNOT4 Canis familiaris ENSCAFG00000003223 I 1.000
Q5BIS2_BOVIN Bos taurus ENSBTAG00000017919 I 1.000
CNOT4 Anolis carolinensis ENSACAG00000011154 I 1.000
CPIJ019539 Culex quinquefasciatus CPIJ019539 I 0.753
CPIJ000383 Culex quinquefasciatus CPIJ000383 I 0.753
AGAP009827 Anopheles gambiae AGAP009827 I 0.766
AAEL009437 Aedes aegypti AAEL009437 I 0.731
AAEL006664 Aedes aegypti AAEL006664 I 0.740
nasonia_NCBI_hmm502784 Nasonia vitripennis nasonia_NCBI_hmm502784 I 0.831
DGIL_AUG5s3525g11t1 Acyrtosiphon pisum DGIL_AUG5s3525g11t1 I 0.727
amel4_ncbi_hmm18698 Apis mellifera amel4_ncbi_hmm18698 I 0.831
amel4_ncbi_hmm16010 Tribolium castaneum amel4_ncbi_hmm16010 I 0.831
amel4_ncbi_hmm16010 Apis mellifera amel4_ncbi_hmm16010 I 0.831
CpipJ_CPIJ019539 Culex pipiens CpipJ_CPIJ019539 I 0.753
CNOT4 Choloepus hoffmanni ENSCHOG00000010412 I 1.000
ENSCING00000004364 Ciona intestinalis ENSCING00000004364 I 0.766
CNOT4 Callithrix jacchus ENSCJAG00000012532 I 1.000
CNOT4 Ornithorhynchus anatinus ENSOANG00000005006 I 1.000
Cnot4 Mus musculus ENSMUSG00000038784 I 1.000
CNOT4 Monodelphis domestica ENSMODG00000014068 I 1.000
CNOT4 Macaca mulatta ENSMMUG00000016181 I 1.000
CNOT4 Microcebus murinus ENSMICG00000001667 I 1.000
CNOT4 Meleagris gallopavo ENSMGAG00000011788 I 1.000
CNOT4 Loxodonta africana ENSLAFG00000000709 I 1.000
CNOT4 Gorilla gorilla ENSGGOG00000000142 I 1.000
Q5ZJC9_CHICK Gallus gallus ENSGALG00000011682 I 1.000
CNOT4 Gasterosteus aculeatus ENSGACG00000004276 I 0.974
CNOT4 Echinops telfairi ENSETEG00000013407 I 0.766
CNOT4 Equus caballus ENSECAG00000020262 I 1.000
CNOT4 Danio rerio ENSDARG00000007045 I 0.974
CNOT4 Cavia porcellus ENSCPOG00000011526 I 1.000
CpipJ_CPIJ000383 Culex pipiens CpipJ_CPIJ000383 I 0.753