PABPN1 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000002167 T37396_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.929
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000002822 RRM 103 172
ENSGACP00000002827 RRM 100 169

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK01594.1 Cannabis sativa PK01594.1 N 0.000
Glyma14g10670.1 Glycine max Glyma14g10670.1 N 0.000
Glyma17g34850.1 Glycine max Glyma17g34850.1 N 0.000
mgf005239m Mimulus guttatus mgf005239m N 0.000
mgf008502m Mimulus guttatus mgf008502m N 0.000
GRMZM2G162992 Zea mays GRMZM2G162992 N 0.000
GRMZM2G177781 Zea mays GRMZM2G177781 N 0.000
Medtr3g140090 Medicago truncatula Medtr3g140090 N 0.000
Medtr3g140110 Medicago truncatula Medtr3g140110 N 0.000
LjSGA_026050.1 Lotus japonicus LjSGA_026050.1 N 0.000
MDP0000142384 Malus x domestica MDP0000142384 N 0.000
MDP0000222202 Malus x domestica MDP0000222202 N 0.000
MDP0000301141 Malus x domestica MDP0000301141 N 0.000
MDP0000302754 Malus x domestica MDP0000302754 N 0.000
MDP0000379391 Malus x domestica MDP0000379391 N 0.000
PDK_20s1621601g001 Phoenix dactylifera PDK_20s1621601g001 N 0.000
ppa002323m Prunus persica ppa002323m N 0.000
Glyma06g05400.1 Glycine max Glyma06g05400.1 N 0.000
Glyma04g05330.1 Glycine max Glyma04g05330.1 N 0.000
PK09389.1 Cannabis sativa PK09389.1 N 0.000
AT2G25970 Arabidopsis thaliana AT2G25970-TAIR-G N 0.000
BGIOSIBCE006191 Oryza indica BGIOSIBCE006191 N 0.000
BRADI3G08410 Brachypodium distachyon BRADI3G08410 N 0.000
XM_002880683.1 Arabidopsis lyrata fgenesh2_kg.4__512__AT2G25970.1 N 0.000
GSVIVG00035354001 Vitis vinifera GSVIVG00035354001 N 0.000
LOC_Os02g13130 Oryza sativa LOC_Os02g13130 N 0.000
B9INI7_POPTR Populus trichocarpa POPTR_0018s05020 N 0.000
SB04G007950 Sorghum bicolor Sb04g007950 N 0.000
29794.m003342 Ricinus communis 29794.m003342 N 0.000
cassava29872.valid.m1 Manihot esculenta cassava29872.valid.m1 N 0.000
cassava30216.valid.m1 Manihot esculenta cassava30216.valid.m1 N 0.000
cassava30217.valid.m1 Manihot esculenta cassava30217.valid.m1 N 0.000
cassava30219.valid.m1 Manihot esculenta cassava30219.valid.m1 N 0.000
Cucsa.220100 Cucumis sativus Cucsa.220100 N 0.000
Cucsa.395190 Cucumis sativus Cucsa.395190 N 0.000
ppa002757m Prunus persica ppa002757m N 0.000