PDK_20s1621601g001 (Phoenix dactylifera)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 PDK_20s1621601g001 T21950_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1621601g001 KH 56 121
PDK_20s1621601g001 KH 164 230

Links

Other KH family RBPs
Other Phoenix dactylifera RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00035354001 Vitis vinifera GSVIVG00035354001 N 0.872
mgf005239m Mimulus guttatus mgf005239m N 0.865
Cucsa.395190 Cucumis sativus Cucsa.395190 N 0.857
PK01594.1 Cannabis sativa PK01594.1 N 0.850
mgf008502m Mimulus guttatus mgf008502m N 0.850
cassava30219.valid.m1 Manihot esculenta cassava30219.valid.m1 N 0.842
AT2G25970 Arabidopsis thaliana AT2G25970-TAIR-G N 0.835
Glyma06g05400.1 Glycine max Glyma06g05400.1 N 0.835
cassava30217.valid.m1 Manihot esculenta cassava30217.valid.m1 N 0.827
cassava30216.valid.m1 Manihot esculenta cassava30216.valid.m1 N 0.827
XM_002880683.1 Arabidopsis lyrata fgenesh2_kg.4__512__AT2G25970.1 N 0.827
MDP0000222202 Malus x domestica MDP0000222202 N 0.812
ppa002323m Prunus persica ppa002323m N 0.812
Glyma17g34850.1 Glycine max Glyma17g34850.1 N 0.805
29794.m003342 Ricinus communis 29794.m003342 N 0.805
MDP0000302754 Malus x domestica MDP0000302754 N 0.805
Glyma14g10670.1 Glycine max Glyma14g10670.1 N 0.805
BGIOSIBCE006191 Oryza indica BGIOSIBCE006191 N 0.797
LOC_Os02g13130 Oryza sativa LOC_Os02g13130 N 0.797
B9INI7_POPTR Populus trichocarpa POPTR_0018s05020 N 0.797
BRADI3G08410 Brachypodium distachyon BRADI3G08410 N 0.789
Medtr1g020830 Medicago truncatula Medtr1g020830 N 0.782
Medtr3g140090 Medicago truncatula Medtr3g140090 N 0.782
Medtr3g140110 Medicago truncatula Medtr3g140110 N 0.782
SB04G007950 Sorghum bicolor Sb04g007950 N 0.782
GRMZM2G177781 Zea mays GRMZM2G177781 N 0.767
GRMZM2G162992 Zea mays GRMZM2G162992 N 0.767
Glyma04g05330.1 Glycine max Glyma04g05330.1 N 0.767
Cucsa.220100 Cucumis sativus Cucsa.220100 N 0.759
LjSGA_026050.1 Lotus japonicus LjSGA_026050.1 N 0.759
ppa002757m Prunus persica ppa002757m N 0.752
PK09389.1 Cannabis sativa PK09389.1 N 0.744
MDP0000379391 Malus x domestica MDP0000379391 N 0.738
MDP0000301141 Malus x domestica MDP0000301141 N 0.737
MDP0000142384 Malus x domestica MDP0000142384 N 0.737
cassava29872.valid.m1 Manihot esculenta cassava29872.valid.m1 N 0.722
29780.m001319 Ricinus communis 29780.m001319 N 0.707
cassava18108.valid.m1 Manihot esculenta cassava18108.valid.m1 N 0.707