B9INI7_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0018s05020 T20233_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s05020.1 KH 138 203
POPTR_0018s05020.1 KH 230 296

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30219.valid.m1 Manihot esculenta cassava30219.valid.m1 N 0.895
cassava30217.valid.m1 Manihot esculenta cassava30217.valid.m1 N 0.895
cassava30216.valid.m1 Manihot esculenta cassava30216.valid.m1 N 0.895
29794.m003342 Ricinus communis 29794.m003342 N 0.895
GSVIVG00035354001 Vitis vinifera GSVIVG00035354001 N 0.872
mgf005239m Mimulus guttatus mgf005239m N 0.865
Cucsa.395190 Cucumis sativus Cucsa.395190 N 0.857
ppa002323m Prunus persica ppa002323m N 0.850
PK01594.1 Cannabis sativa PK01594.1 N 0.842
MDP0000222202 Malus x domestica MDP0000222202 N 0.835
MDP0000302754 Malus x domestica MDP0000302754 N 0.835
Medtr1g020830 Medicago truncatula Medtr1g020830 N 0.835
Glyma06g05400.1 Glycine max Glyma06g05400.1 N 0.820
Glyma17g34850.1 Glycine max Glyma17g34850.1 N 0.820
Glyma14g10670.1 Glycine max Glyma14g10670.1 N 0.820
LjSGA_026050.1 Lotus japonicus LjSGA_026050.1 N 0.812
mgf008502m Mimulus guttatus mgf008502m N 0.805
PDK_20s1621601g001 Phoenix dactylifera PDK_20s1621601g001 N 0.797
AT2G25970 Arabidopsis thaliana AT2G25970-TAIR-G N 0.774
XM_002880683.1 Arabidopsis lyrata fgenesh2_kg.4__512__AT2G25970.1 N 0.774
GRMZM2G177781 Zea mays GRMZM2G177781 N 0.774
GRMZM2G162992 Zea mays GRMZM2G162992 N 0.774
BGIOSIBCE006191 Oryza indica BGIOSIBCE006191 N 0.767
BRADI3G08410 Brachypodium distachyon BRADI3G08410 N 0.767
Medtr3g140110 Medicago truncatula Medtr3g140110 N 0.767
Medtr3g140090 Medicago truncatula Medtr3g140090 N 0.767
LOC_Os02g13130 Oryza sativa LOC_Os02g13130 N 0.767
MDP0000379391 Malus x domestica MDP0000379391 N 0.766
SB04G007950 Sorghum bicolor Sb04g007950 N 0.759
Glyma04g05330.1 Glycine max Glyma04g05330.1 N 0.752
MDP0000301141 Malus x domestica MDP0000301141 N 0.722
MDP0000142384 Malus x domestica MDP0000142384 N 0.714
Cucsa.220100 Cucumis sativus Cucsa.220100 N 0.714
cassava29872.valid.m1 Manihot esculenta cassava29872.valid.m1 N 0.714
ppa002757m Prunus persica ppa002757m N 0.714
cassava18108.valid.m1 Manihot esculenta cassava18108.valid.m1 N 0.707
29780.m001319 Ricinus communis 29780.m001319 N 0.707
PK09389.1 Cannabis sativa PK09389.1 N 0.707