XM_002880683.1 (Arabidopsis lyrata)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh2_kg.4__512__AT2G25970.1 T20072_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.4__512__AT2G25970.1 KH 135 200
fgenesh2_kg.4__512__AT2G25970.1 KH 230 296

Links

Other KH family RBPs
Other Arabidopsis lyrata RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G25970 Arabidopsis thaliana AT2G25970-TAIR-G N 0.985
Cucsa.395190 Cucumis sativus Cucsa.395190 N 0.880
GSVIVG00035354001 Vitis vinifera GSVIVG00035354001 N 0.865
PK01594.1 Cannabis sativa PK01594.1 N 0.850
mgf008502m Mimulus guttatus mgf008502m N 0.842
Glyma06g05400.1 Glycine max Glyma06g05400.1 N 0.835
mgf005239m Mimulus guttatus mgf005239m N 0.827
PDK_20s1621601g001 Phoenix dactylifera PDK_20s1621601g001 N 0.827
MDP0000222202 Malus x domestica MDP0000222202 N 0.820
MDP0000302754 Malus x domestica MDP0000302754 N 0.820
Medtr1g020830 Medicago truncatula Medtr1g020830 N 0.820
ppa002323m Prunus persica ppa002323m N 0.812
BRADI3G08410 Brachypodium distachyon BRADI3G08410 N 0.812
cassava30217.valid.m1 Manihot esculenta cassava30217.valid.m1 N 0.812
cassava30216.valid.m1 Manihot esculenta cassava30216.valid.m1 N 0.812
Medtr3g140110 Medicago truncatula Medtr3g140110 N 0.805
cassava30219.valid.m1 Manihot esculenta cassava30219.valid.m1 N 0.805
Glyma17g34850.1 Glycine max Glyma17g34850.1 N 0.805
Glyma14g10670.1 Glycine max Glyma14g10670.1 N 0.805
LOC_Os02g13130 Oryza sativa LOC_Os02g13130 N 0.797
Medtr3g140090 Medicago truncatula Medtr3g140090 N 0.797
BGIOSIBCE006191 Oryza indica BGIOSIBCE006191 N 0.797
GRMZM2G177781 Zea mays GRMZM2G177781 N 0.789
29794.m003342 Ricinus communis 29794.m003342 N 0.789
LjSGA_026050.1 Lotus japonicus LjSGA_026050.1 N 0.789
SB04G007950 Sorghum bicolor Sb04g007950 N 0.782
B9INI7_POPTR Populus trichocarpa POPTR_0018s05020 N 0.774
GRMZM2G162992 Zea mays GRMZM2G162992 N 0.767
Glyma04g05330.1 Glycine max Glyma04g05330.1 N 0.759
ppa002757m Prunus persica ppa002757m N 0.752
MDP0000379391 Malus x domestica MDP0000379391 N 0.752
MDP0000142384 Malus x domestica MDP0000142384 N 0.729
MDP0000301141 Malus x domestica MDP0000301141 N 0.722
Cucsa.220100 Cucumis sativus Cucsa.220100 N 0.714
PK09389.1 Cannabis sativa PK09389.1 N 0.707