CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Gm9833
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000049230
T39375_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000058811
RRM
93
163
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSMUSP00000058811
RRM
226
295
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH
ENSMUSP00000058811
RRM
459
497
IFVRNLPFDLTWQKLKEKFSQCGQINRDSKTHSNCGQHH
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.748
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.710
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.790
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.790
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.790
MYEF2
Pteropus vampyrus
ENSPVAG00000004102
N
0.906
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.911
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.781
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.786
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.716
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.709
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.724
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.790
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.790
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.724
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.790
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.790
MYEF2
Ornithorhynchus anatinus
ENSOANG00000007375
N
0.872
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.702
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.790
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.790
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.786
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.749
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.786
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.790
MYEF2
Homo sapiens
ENSG00000104177
N
0.790
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.724
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.790
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.786
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.911
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.790
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.790
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.705
Myef2
Mus musculus
ENSMUSG00000027201
N
0.906
AAI08588
Xenopus laevis
AAI08588
N
0.724