CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MYEF2
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000002730
T40100_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000003405
RRM
83
153
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDDEFVKKAVLTMNKHDLNGRPLN
ENSORLP00000003405
RRM
215
284
VFVANLDFKVGWKKLKEVFGMAGVVKRADVKEDKDGKSRGMGTVTFDQPLEAVQAISMFNGQMLFDRQMH
ENSORLP00000003405
RRM
496
564
IFVRNLSYDLTWQKLKEKFSHCGQVMFAEIKMENGRSKGCGTVRFDSPESAEKACRLMNGTKINGREVD
ENSORLP00000003408
RRM
83
153
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDDEFVKKAVLTMNKHDLNGRPLN
ENSORLP00000003408
RRM
215
284
VFVANLDFKVGWKKLKEVFGMAGVVKRADVKEDKDGKSRGMGTVTFDQPLEAVQAISMFNGQMLFDRQMH
ENSORLP00000003408
RRM
492
560
IFVRNLSYDLTWQKLKEKFSHCGQVMFAEIKMENGRSKGCGTVRFDSPESAEKACRLMNGTKINGREVD
ENSORLP00000003410
RRM
64
134
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRVNIVVEFKDDEFVKKAVLTMNKHDLNGRPLN
ENSORLP00000003410
RRM
196
265
VFVANLDFKVGWKKLKEVFGMAGVVKRADVKEDKDGKSRGMGTVTFDQPLEAVQAISMFNGQMLFDRQMH
ENSORLP00000003410
RRM
526
594
IFVRNLSYDLTWQKLKEKFSHCGQVMFAEIKMENGRSKGCGTVRFDSPESAEKACRLMNGTKINGREVD
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
69 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.943
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.943
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.939
myef2
Danio rerio
ENSDARG00000059398
N
0.929
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.886
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.886
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.886
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.886
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.886
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.886
MYEF2
Homo sapiens
ENSG00000104177
N
0.886
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.886
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.886
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.886
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.886
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.886
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.886
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.886
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.886
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.881
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.881
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.881
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.881
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.881
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.876
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.876
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.876
Myef2
Mus musculus
ENSMUSG00000027201
N
0.876
AAI08588
Xenopus laevis
AAI08588
N
0.862
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.839
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.829
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.819
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.790
MYEF2
Ochotona princeps
ENSOPRG00000003919
N
0.781
MYEF2
Sorex araneus
ENSSARG00000003264
N
0.767
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.738
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.738
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.730
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.729
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.729
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.725
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.725
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.725
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.725
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.725
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.725
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.725
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.725
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.725
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.725
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.725
HNRNPM
Homo sapiens
ENSG00000099783
N
0.725
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.725
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.725
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.725
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.725
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.725
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.725
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.725
AAI34826
Xenopus laevis
AAI34826
N
0.720
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.720
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.720
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.716
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.712
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.711
Gm9833
Mus musculus
ENSMUSG00000049230
N
0.710
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.703
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.701