CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAI08588
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAI08588
T59611_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI08588
RRM
131
201
VFISNIPYDMKWQAIKDLMRDKVGEVTYVELFKDAEGKSRGNGVVEFRDMEYVTKAVEVMNKQDLNGRPLN
AAI08588
RRM
267
336
IFVANLDFKVGWKKLKEVFCISGTVKRADIKEDKDGKSRGMGTVTFEQPIEAVQAISMFNGQFLFDRPMH
AAI08588
RRM
598
666
IFVRNLPFDLTWQKLKEKFNQCGRVMFAEIKMENGKSKGCGTVRFDCPETAEKACRLMNGMKINGREID
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
72 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.976
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.914
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.905
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.905
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.905
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.905
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.905
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.905
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.905
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.905
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.905
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.905
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.905
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.905
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.905
MYEF2
Homo sapiens
ENSG00000104177
N
0.905
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.900
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.900
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.900
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.900
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.900
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.900
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.900
Myef2
Mus musculus
ENSMUSG00000027201
N
0.895
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.862
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.858
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.850
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.848
myef2
Danio rerio
ENSDARG00000059398
N
0.848
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.848
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.838
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.824
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.810
MYEF2
Sorex araneus
ENSSARG00000003264
N
0.790
MYEF2
Ochotona princeps
ENSOPRG00000003919
N
0.790
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.748
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.743
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.739
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.735
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.735
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.735
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.735
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.735
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.735
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.735
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.735
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.735
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.735
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.735
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.735
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.735
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.735
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.735
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.735
HNRNPM
Homo sapiens
ENSG00000099783
N
0.735
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.735
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.730
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.730
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.730
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.725
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.724
Gm9833
Mus musculus
ENSMUSG00000049230
N
0.724
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.722
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.720
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.719
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.716
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.712
AAI34826
Xenopus laevis
AAI34826
N
0.711
MYEF2
Pteropus vampyrus
ENSPVAG00000004102
N
0.710
MYEF2
Myotis lucifugus
ENSMLUG00000006781
N
0.710
MYEF2
Spermophilus tridecemlineatus
ENSSTOG00000007740
N
0.705
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.703