CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MYEF2
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000009526
T42071_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000012399
RRM
83
153
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEDFVKKAIETMNKHDLSGRPLN
ENSTNIP00000012399
RRM
216
285
VFVANLDFKVGWKKLKEVFSMAGVVKRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMLNGQMLFDRQMH
ENSTNIP00000012399
RRM
486
554
IFVRNLSYDLTWQKLKEKFSHCGQVMFAEIKMENGKSKGCGTVRFDSPESAEKACRLMNGSKINGREVD
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.953
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.943
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.938
myef2
Danio rerio
ENSDARG00000059398
N
0.910
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.896
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.896
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.896
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.896
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.896
MYEF2
Homo sapiens
ENSG00000104177
N
0.896
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.896
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.896
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.896
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.896
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.896
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.896
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.896
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.896
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.891
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.891
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.891
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.891
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.891
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.891
Myef2
Mus musculus
ENSMUSG00000027201
N
0.886
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.886
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.867
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.863
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.849
AAI08588
Xenopus laevis
AAI08588
N
0.848
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.848
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.820
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.801
MYEF2
Ochotona princeps
ENSOPRG00000003919
N
0.791
MYEF2
Sorex araneus
ENSSARG00000003264
N
0.777
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.741
HNRNPM
Homo sapiens
ENSG00000099783
N
0.736
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.736
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.736
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.736
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.736
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.736
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.736
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.736
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.736
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.736
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.736
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.736
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.736
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.736
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.736
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.736
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.736
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.736
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.736
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.731
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.731
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.726
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.725
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.722
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.722
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.717
Gm9833
Mus musculus
ENSMUSG00000049230
N
0.716
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.716
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.712
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.711
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.708
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.706
AAI34826
Xenopus laevis
AAI34826
N
0.703
MYEF2
Spermophilus tridecemlineatus
ENSSTOG00000007740
N
0.701