CNOT4 (Taeniopygia guttata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTGUG00000009161 T41936_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		1.000
e_gw.71.47.1
M233_0.6 		Nematostella vectensis AGAYASA RNAcompete
Ray et al.(2013)
RNCMPT00278 		0.766
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000009445 RRM 111 187

Links

Other RRM family RBPs
Other Taeniopygia guttata RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Homo sapiens ENSG00000011304 D 0.000
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.000
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.000
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.000
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.000
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.000
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.000
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.000
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.000
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.000
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.000
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.000
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.000
Rod1 Mus musculus ENSMUSG00000028382 I 0.000
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.000
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.000
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.000
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.000
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.000
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.000
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.000
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.000
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.000
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.000
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.000
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.000
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.000
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.000
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.000
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.000
AAF00041 Xenopus laevis AAF00041 I 0.000
AAH45068 Xenopus laevis AAH45068 I 0.000
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.000
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.000
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.000
Smptb Rattus norvegicus ENSRNOG00000028033 I 0.000
ROD1 Sus scrofa ENSSSCG00000005466 I 0.000
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.000
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.000
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.000
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.000
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.000
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.000
AAH97557 Xenopus laevis AAH97557 I 0.000
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.000
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.000
ptbp1b Danio rerio ENSDARG00000031907 I 0.000
ROD1 Danio rerio ENSDARG00000043757 I 0.000
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.000
LOC100057336 Equus caballus ENSECAG00000015783 I 0.000
PTBP1 Equus caballus ENSECAG00000018845 I 0.000
ROD1 Equus caballus ENSECAG00000021243 I 0.000
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.000
PTBP2 Homo sapiens ENSG00000117569 I 0.000
ptbp1a Danio rerio ENSDARG00000019362 I 0.000
PTBP2 Danio rerio ENSDARG00000015901 I 0.000
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.000
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.000
ROD1 Bos taurus ENSBTAG00000016750 I 0.000
ROD1 Canis familiaris ENSCAFG00000003015 I 0.000
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.000
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.000
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.000
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.000
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.000
ROD1 Homo sapiens ENSG00000119314 I 0.000
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.000
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.000
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.000
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.000
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.000
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.000
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.000
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.000
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.000
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.000
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.000
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.000
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.000
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.000
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.000
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.000
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.000
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.000
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.000
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.000
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.000
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.000