CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNOT4
(
Taeniopygia guttata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTGUG00000009161
T41936_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
1.000
e_gw.71.47.1
M233_0.6
Nematostella vectensis
AGAYASA
RNAcompete
Ray et al.(2013)
RNCMPT00278
0.766
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.727
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000009445
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
Links
Other
RRM
family RBPs
Other
Taeniopygia guttata
RBPs
68 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTBP1
Homo sapiens
ENSG00000011304
D
0.000
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.000
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.000
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.000
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.000
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.000
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.000
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.000
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.000
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.000
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.000
PTBP2
Oryzias latipes
ENSORLG00000019191
I
0.000
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.000
Rod1
Mus musculus
ENSMUSG00000028382
I
0.000
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.000
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.000
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.000
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.000
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.000
PTBP2
Oryzias latipes
ENSORLG00000013557
I
0.000
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.000
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.000
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.000
ENSRNOG00000027820
Rattus norvegicus
ENSRNOG00000027820
I
0.000
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.000
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.000
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.000
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.000
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.000
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.000
AAF00041
Xenopus laevis
AAF00041
I
0.000
AAH45068
Xenopus laevis
AAH45068
I
0.000
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.000
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.000
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.000
Smptb
Rattus norvegicus
ENSRNOG00000028033
I
0.000
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.000
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.000
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.000
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.000
ROD1
Tetraodon nigroviridis
ENSTNIG00000002790
I
0.000
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.000
ROD1
Takifugu rubripes
ENSTRUG00000007042
I
0.000
AAH97557
Xenopus laevis
AAH97557
I
0.000
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.000
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.000
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.000
ROD1
Danio rerio
ENSDARG00000043757
I
0.000
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.000
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.000
PTBP1
Equus caballus
ENSECAG00000018845
I
0.000
ROD1
Equus caballus
ENSECAG00000021243
I
0.000
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.000
PTBP2
Homo sapiens
ENSG00000117569
I
0.000
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.000
PTBP2
Danio rerio
ENSDARG00000015901
I
0.000
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.000
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.000
ROD1
Bos taurus
ENSBTAG00000016750
I
0.000
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.000
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.000
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.000
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.000
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.000
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.000
ROD1
Homo sapiens
ENSG00000119314
I
0.000
PTBP2
Gasterosteus aculeatus
ENSGACG00000000940
I
0.000
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.000
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.000
PTBP2
Microcebus murinus
ENSMICG00000008543
I
0.000
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.000
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.000
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.000
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.000
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.000
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.000
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.000
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.000
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.000
PTBP1
Gasterosteus aculeatus
ENSGACG00000013587
I
0.000
PTBP2
Gasterosteus aculeatus
ENSGACG00000014892
I
0.000
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.000
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.000
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.000
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.000
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.000
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.000
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.000