CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNOT4
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000016861
T42366_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
0.987
e_gw.71.47.1
M233_0.6
Nematostella vectensis
AGAYASA
RNAcompete
Ray et al.(2013)
RNCMPT00278
0.753
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.714
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000043205
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSTRUP00000043206
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSTRUP00000043207
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
69 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Hrb87F
Drosophila melanogaster
FBgn0004237
D
0.000
Hrb98DE
Drosophila melanogaster
FBgn0001215
D
0.000
GM16385
Drosophila sechellia
FBgn0171300
I
0.000
GM25918
Drosophila sechellia
FBgn0180774
I
0.000
GD21374
Drosophila simulans
FBgn0192810
I
0.000
GJ22934
Drosophila virilis
FBgn0210037
I
0.000
GJ23111
Drosophila virilis
FBgn0210213
I
0.000
GK12096
Drosophila willistoni
FBgn0214107
I
0.000
CpipJ_CPIJ001612
Culex pipiens
CpipJ_CPIJ001612
I
0.000
GK13334
Drosophila willistoni
FBgn0215343
I
0.000
GE23791
Drosophila yakuba
FBgn0240946
I
0.000
GE24426
Drosophila yakuba
FBgn0241543
I
0.000
GA26465-RA
Drosophila pseudoobscura
FBgn0247839
I
0.000
GA26796-RA
Drosophila pseudoobscura
FBgn0248169
I
0.000
GL13791
Drosophila persimilis
FBgn0151396
I
0.000
GI10692
Drosophila mojavensis
FBgn0133456
I
0.000
GI10577
Drosophila mojavensis
FBgn0133341
I
0.000
amel4_ncbi_hmm27519
Apis mellifera
amel4_ncbi_hmm27519
I
0.000
nasonia_NCBI_hmm916274
Nasonia vitripennis
nasonia_NCBI_hmm916274
I
0.000
AAEL010467
Aedes aegypti
AAEL010467
I
0.000
AGAP002374
Anopheles gambiae
AGAP002374
I
0.000
GF17368
Drosophila ananassae
FBgn0094386
I
0.000
GF18582
Drosophila ananassae
FBgn0095600
I
0.000
GG11603
Drosophila erecta
FBgn0103900
I
0.000
GG17033
Drosophila erecta
FBgn0109261
I
0.000
GH17116
Drosophila grimshawi
FBgn0124586
I
0.000
GH19058
Drosophila grimshawi
FBgn0126525
I
0.000
BGIBMGA006405
Bombyx mori
BGIBMGA006405
I
0.000
DGIL_AUG5s14056g7t1
Acyrtosiphon pisum
DGIL_AUG5s14056g7t1
N
0.000