CNOT4 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000016861 T42366_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.987
e_gw.71.47.1
M233_0.6 		Nematostella vectensis AGAYASA RNAcompete
Ray et al.(2013)
RNCMPT00278 		0.753
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000043205 RRM 111 187
ENSTRUP00000043206 RRM 111 187
ENSTRUP00000043207 RRM 111 187

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Hrb87F Drosophila melanogaster FBgn0004237 D 0.000
Hrb98DE Drosophila melanogaster FBgn0001215 D 0.000
GM16385 Drosophila sechellia FBgn0171300 I 0.000
GM25918 Drosophila sechellia FBgn0180774 I 0.000
GD21374 Drosophila simulans FBgn0192810 I 0.000
GJ22934 Drosophila virilis FBgn0210037 I 0.000
GJ23111 Drosophila virilis FBgn0210213 I 0.000
GK12096 Drosophila willistoni FBgn0214107 I 0.000
CpipJ_CPIJ001612 Culex pipiens CpipJ_CPIJ001612 I 0.000
GK13334 Drosophila willistoni FBgn0215343 I 0.000
GE23791 Drosophila yakuba FBgn0240946 I 0.000
GE24426 Drosophila yakuba FBgn0241543 I 0.000
GA26465-RA Drosophila pseudoobscura FBgn0247839 I 0.000
GA26796-RA Drosophila pseudoobscura FBgn0248169 I 0.000
GL13791 Drosophila persimilis FBgn0151396 I 0.000
GI10692 Drosophila mojavensis FBgn0133456 I 0.000
GI10577 Drosophila mojavensis FBgn0133341 I 0.000
amel4_ncbi_hmm27519 Apis mellifera amel4_ncbi_hmm27519 I 0.000
nasonia_NCBI_hmm916274 Nasonia vitripennis nasonia_NCBI_hmm916274 I 0.000
AAEL010467 Aedes aegypti AAEL010467 I 0.000
AGAP002374 Anopheles gambiae AGAP002374 I 0.000
GF17368 Drosophila ananassae FBgn0094386 I 0.000
GF18582 Drosophila ananassae FBgn0095600 I 0.000
GG11603 Drosophila erecta FBgn0103900 I 0.000
GG17033 Drosophila erecta FBgn0109261 I 0.000
GH17116 Drosophila grimshawi FBgn0124586 I 0.000
GH19058 Drosophila grimshawi FBgn0126525 I 0.000
BGIBMGA006405 Bombyx mori BGIBMGA006405 I 0.000
DGIL_AUG5s14056g7t1 Acyrtosiphon pisum DGIL_AUG5s14056g7t1 N 0.000