28644.m000926 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 28644.m000926 T48639_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
28644.m000926 RRM 10 80

Links

Other RRM family RBPs
Other Ricinus communis RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH80037 Xenopus laevis AAH80037 N 0.817
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.803
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.817
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.803
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.817
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.803
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.803
CSTF2T Sorex araneus ENSSARG00000002013 N 0.803
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.803
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.803
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.817
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.803
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.817
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.803
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.803
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.803
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.817
Cstf2t Mus musculus ENSMUSG00000053536 N 0.803
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.803
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.803
AAH41291 Xenopus laevis AAH41291 N 0.817
AAB50269 Xenopus laevis AAB50269 N 0.817
fgenesh2_pm.C_scaffold_8000201 Heterobasidion annosum fgenesh2_pm.C_scaffold_8000201 N 0.000
fgenesh1_pm.C_scaffold_1000789 Pleurotus ostreatus fgenesh1_pm.C_scaffold_1000789 N 0.000
estExt_fgenesh2_kg.C_100155 Agaricus bisporus estExt_fgenesh2_kg.C_100155 N 0.000
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.803
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.817
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.789
estExt_Genewise1_worm.C_70120 Laccaria bicolor estExt_Genewise1_worm.C_70120 N 0.000
estExt_fgenesh2_pg.C_60367 Schizophyllum commune estExt_fgenesh2_pg.C_60367 N 0.000
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.845
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.845
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.817
ISCW015573 Ixodes scapularis ISCW015573 N 0.817
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.817
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.817
Cstf2 Mus musculus ENSMUSG00000031256 N 0.817
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.817
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.817
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.817
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.803
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.803
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.817
ENSCING00000017649 Ciona intestinalis ENSCING00000017649 N 0.746
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.803
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.817
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.803
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.817
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.817
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.817
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.817
WUBG_08006 Wuchereria bancrofti WUBG_08006 N 0.000
UM02881 Ustilago maydis UM02881 N 0.718
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.775
RO3G_14170 Rhizopus oryzae RO3G_14170 N 0.718
LOAG_12614 Loa loa LOAG_12614 N 0.000
cstf2 Danio rerio ENSDARG00000044009 N 0.803
CSTF2 Equus caballus ENSECAG00000009325 N 0.775
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.803
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.803
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.817
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.817
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.817
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.817
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.803
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.817
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.803
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.817
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.803
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.817
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.803
CSTF2T Homo sapiens ENSG00000177613 N 0.803
CSTF2 Homo sapiens ENSG00000101811 N 0.817
CSTF2T Felis catus ENSFCAG00000013011 N 0.803
CSTF2 Felis catus ENSFCAG00000007000 N 0.817
Bm1_06205 Brugia malayi Bm1_06205 N 0.000