cstf2 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000044009 T36152_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000056626 RRM 26 96
ENSDARP00000064611 RRM 26 74

Links

Other RRM family RBPs
Other Danio rerio RBPs

135 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CSTF2 Oryzias latipes ENSORLG00000001380 N 1.000
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 1.000
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 1.000
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 1.000
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.986
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.986
CSTF2T Felis catus ENSFCAG00000013011 N 0.986
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.986
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.986
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.986
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.986
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.986
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.986
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.986
CSTF2T Sorex araneus ENSSARG00000002013 N 0.986
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.986
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.986
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.986
AAH80037 Xenopus laevis AAH80037 N 0.986
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.986
AAH41291 Xenopus laevis AAH41291 N 0.986
AAB50269 Xenopus laevis AAB50269 N 0.986
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.986
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.986
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.986
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.986
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.986
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.986
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.986
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.986
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.986
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.986
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.986
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.986
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.986
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.986
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.986
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.986
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.986
CSTF2T Homo sapiens ENSG00000177613 N 0.986
CSTF2 Homo sapiens ENSG00000101811 N 0.986
CSTF2 Felis catus ENSFCAG00000007000 N 0.986
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.986
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.986
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.986
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.986
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.986
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.986
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.986
Cstf2 Mus musculus ENSMUSG00000031256 N 0.986
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.986
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.986
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.986
Cstf2t Mus musculus ENSMUSG00000053536 N 0.986
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.958
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.958
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.958
CSTF2 Equus caballus ENSECAG00000009325 N 0.944
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.944
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.944
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.944
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.944
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.901
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.901
ISCW015573 Ixodes scapularis ISCW015573 N 0.887
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.873
ENSCSAVG00000010770 Ciona savignyi ENSCSAVG00000010770 N 0.873
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.873
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.859
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.859
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.859
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.859
AGAP010918 Anopheles gambiae AGAP010918 N 0.845
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.845
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.845
ENSCING00000017649 Ciona intestinalis ENSCING00000017649 N 0.845
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.831
AAEL013869 Aedes aegypti AAEL013869 N 0.831
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.831
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.831
PASA_GEN_0100181 Daphnia pulex PASA_GEN_0100181 N 0.817
SNAPOd2T00016915001 Oikopleura dioica SNAPOd2T00016915001 N 0.817
AGAP004414 Anopheles gambiae AGAP004414 N 0.817
112541 Helobdella robusta 112541 N 0.817
XP_002159315.1 Hydra magnipapillata XP_002159315.1 N 0.803
28644.m000926 Ricinus communis 28644.m000926 N 0.803
GD19237 Drosophila simulans FBgn0190742 N 0.803
GM17877 Drosophila sechellia FBgn0172784 N 0.803
GJ10336 Drosophila virilis FBgn0197622 N 0.803
GK14167 Drosophila willistoni FBgn0216173 N 0.803
GE25546 Drosophila yakuba FBgn0242611 N 0.803
GI23336 Drosophila mojavensis FBgn0146063 N 0.803
GL24357 Drosophila persimilis FBgn0161947 N 0.803
CstF-64 Drosophila melanogaster FBgn0027841 N 0.803
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.803
GF16912 Drosophila ananassae FBgn0093932 N 0.803
GG22991 Drosophila erecta FBgn0115148 N 0.803
GH18352 Drosophila grimshawi FBgn0125820 N 0.803
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.789
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.789
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.789
PK22244.1 Cannabis sativa PK22244.1 N 0.789
mgf012202m Mimulus guttatus mgf012202m N 0.789
mgf002767m Mimulus guttatus mgf002767m N 0.789
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.789
MDP0000283046 Malus x domestica MDP0000283046 N 0.789
ppa004010m Prunus persica ppa004010m N 0.789
MDP0000142436 Malus x domestica MDP0000142436 N 0.789
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.789
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.775
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.775
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.775
s_451557 Phytophthora sojae s_451557 N 0.775
SB05G004860 Sorghum bicolor Sb05g004860 N 0.775
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.775
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.775
estExt_Genewise1.C_550102 Capitella teleta estExt_Genewise1.C_550102 N 0.775
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.775
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.761
PITG_14249 Phytophthora infestans PITG_14249 N 0.761
MDP0000208337 Malus x domestica MDP0000208337 N 0.761
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.761
PHUM441150 Pediculus humanus PHUM441150 N 0.761
gw1.20.80.1 Selaginella moellendorfii gw1.20.80.1 N 0.746
BGIOSIBCE033690 Oryza indica BGIOSIBCE033690 N 0.746
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.746
EFA81339.1 Polysphondylium pallidum EFA81339.1 N 0.732
gw1.36.17.1 Physcomitrella patens gw1.36.17.1 N 0.732
GSTUMT00004863001 Tuber melanosporum GSTUMT00004863001 N 0.718
WUBG_08006 Wuchereria bancrofti WUBG_08006 N 0.718
UM02881 Ustilago maydis UM02881 N 0.718
Bm1_06205 Brugia malayi Bm1_06205 N 0.718
estExt_Genewise1.C_230050 Postia placenta estExt_Genewise1.C_230050 N 0.718
LOC100062520 Equus caballus ENSECAG00000004701 N 0.704
LOAG_12614 Loa loa LOAG_12614 N 0.704