ENSCING00000017649 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000017649 T35454_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000006684 RRM 18 88

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

126 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCSAVG00000010770 Ciona savignyi ENSCSAVG00000010770 N 0.944
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.845
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.845
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.845
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.845
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.845
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.845
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.845
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.845
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.845
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.845
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.845
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.845
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.845
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.845
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.845
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.845
AAH41291 Xenopus laevis AAH41291 N 0.845
AAH80037 Xenopus laevis AAH80037 N 0.845
AAB50269 Xenopus laevis AAB50269 N 0.845
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.845
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.845
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.845
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.845
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.845
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.845
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.845
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.845
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.845
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.845
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.845
CSTF2T Sorex araneus ENSSARG00000002013 N 0.845
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.845
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.845
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.845
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.845
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.845
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.845
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.845
CSTF2 Homo sapiens ENSG00000101811 N 0.845
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.845
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.845
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.845
cstf2 Danio rerio ENSDARG00000044009 N 0.845
CSTF2T Felis catus ENSFCAG00000013011 N 0.845
CSTF2 Felis catus ENSFCAG00000007000 N 0.845
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.845
CSTF2T Homo sapiens ENSG00000177613 N 0.845
Cstf2t Mus musculus ENSMUSG00000053536 N 0.845
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.845
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.845
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.845
Cstf2 Mus musculus ENSMUSG00000031256 N 0.845
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.845
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.845
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.845
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.845
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.845
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.831
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.817
ISCW015573 Ixodes scapularis ISCW015573 N 0.817
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.817
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.817
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.817
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.817
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.817
AAEL013869 Aedes aegypti AAEL013869 N 0.817
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.817
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.817
CSTF2 Equus caballus ENSECAG00000009325 N 0.803
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.803
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.803
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.803
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.803
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.803
AGAP010918 Anopheles gambiae AGAP010918 N 0.803
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.803
SNAPOd2T00016915001 Oikopleura dioica SNAPOd2T00016915001 N 0.803
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.803
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.789
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.789
GJ10336 Drosophila virilis FBgn0197622 N 0.775
GH18352 Drosophila grimshawi FBgn0125820 N 0.775
GD19237 Drosophila simulans FBgn0190742 N 0.775
GI23336 Drosophila mojavensis FBgn0146063 N 0.775
GM17877 Drosophila sechellia FBgn0172784 N 0.775
GL24357 Drosophila persimilis FBgn0161947 N 0.775
GK14167 Drosophila willistoni FBgn0216173 N 0.775
GG22991 Drosophila erecta FBgn0115148 N 0.775
GE25546 Drosophila yakuba FBgn0242611 N 0.775
GF16912 Drosophila ananassae FBgn0093932 N 0.775
CstF-64 Drosophila melanogaster FBgn0027841 N 0.775
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.775
AGAP004414 Anopheles gambiae AGAP004414 N 0.761
XP_002159315.1 Hydra magnipapillata XP_002159315.1 N 0.746
112541 Helobdella robusta 112541 N 0.746
estExt_Genewise1.C_550102 Capitella teleta estExt_Genewise1.C_550102 N 0.746
28644.m000926 Ricinus communis 28644.m000926 N 0.746
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.732
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.732
PK22244.1 Cannabis sativa PK22244.1 N 0.732
MDP0000283046 Malus x domestica MDP0000283046 N 0.732
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.732
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.732
mgf012202m Mimulus guttatus mgf012202m N 0.732
mgf002767m Mimulus guttatus mgf002767m N 0.732
MDP0000142436 Malus x domestica MDP0000142436 N 0.732
ppa004010m Prunus persica ppa004010m N 0.732
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.732
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.718
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.718
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.718
SB05G004860 Sorghum bicolor Sb05g004860 N 0.718
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.718
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.718
PASA_GEN_0100181 Daphnia pulex PASA_GEN_0100181 N 0.718
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.718
gw1.20.80.1 Selaginella moellendorfii gw1.20.80.1 N 0.704
s_451557 Phytophthora sojae s_451557 N 0.704
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.704
MDP0000208337 Malus x domestica MDP0000208337 N 0.704
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.704
PITG_14249 Phytophthora infestans PITG_14249 N 0.704
PHUM441150 Pediculus humanus PHUM441150 N 0.704
estExt_Genewise1.C_230050 Postia placenta estExt_Genewise1.C_230050 N 0.704
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.704