fgeneshTA2_pg.C_scaffold_5000618 (Trichoplax adhaerens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgeneshTA2_pg.C_scaffold_5000618 T52530_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshTA2_pg.C_scaffold_5000618 RRM 15 85

Links

Other RRM family RBPs
Other Trichoplax adhaerens RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.845
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.845
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.845
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.845
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.845
CSTF2 Homo sapiens ENSG00000101811 N 0.845
CSTF2 Felis catus ENSFCAG00000007000 N 0.845
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.845
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.845
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.845
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.845
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.845
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.845
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.845
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.845
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.845
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.845
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.845
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.845
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.845
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.845
Cstf2 Mus musculus ENSMUSG00000031256 N 0.845
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.845
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.845
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.845
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.845
AAH41291 Xenopus laevis AAH41291 N 0.845
AAB50269 Xenopus laevis AAB50269 N 0.845
AAH80037 Xenopus laevis AAH80037 N 0.845
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.831
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.831
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.831
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.831
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.831
CSTF2T Felis catus ENSFCAG00000013011 N 0.831
CSTF2T Homo sapiens ENSG00000177613 N 0.831
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.831
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.831
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.831
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.831
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.831
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.831
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.831
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.831
ISCW015573 Ixodes scapularis ISCW015573 N 0.831
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.831
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.831
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.831
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.831
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.831
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.831
CSTF2T Sorex araneus ENSSARG00000002013 N 0.831
cstf2 Danio rerio ENSDARG00000044009 N 0.831
Cstf2t Mus musculus ENSMUSG00000053536 N 0.831
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.831
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.831
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.831
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.831
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.817
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.817
ENSCING00000017649 Ciona intestinalis ENSCING00000017649 N 0.817
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.817
ENSCSAVG00000010770 Ciona savignyi ENSCSAVG00000010770 N 0.817
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.817
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.803
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.803
CSTF2 Equus caballus ENSECAG00000009325 N 0.803
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.803
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.803
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.803
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.803
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.803
AAEL013869 Aedes aegypti AAEL013869 N 0.789
AGAP010918 Anopheles gambiae AGAP010918 N 0.789
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.789
estExt_Genewise1.C_550102 Capitella teleta estExt_Genewise1.C_550102 N 0.789
28644.m000926 Ricinus communis 28644.m000926 N 0.789
112541 Helobdella robusta 112541 N 0.789
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.789
gw1.20.80.1 Selaginella moellendorfii gw1.20.80.1 N 0.789
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.789
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.789
MDP0000142436 Malus x domestica MDP0000142436 N 0.775
mgf012202m Mimulus guttatus mgf012202m N 0.775
PK22244.1 Cannabis sativa PK22244.1 N 0.775
mgf002767m Mimulus guttatus mgf002767m N 0.775
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.775
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.775
MDP0000283046 Malus x domestica MDP0000283046 N 0.775
PASA_GEN_0100181 Daphnia pulex PASA_GEN_0100181 N 0.775
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.775
ppa004010m Prunus persica ppa004010m N 0.775
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.775
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.775
XP_002159315.1 Hydra magnipapillata XP_002159315.1 N 0.775
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.775
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.775
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.775
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.775
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.775
GJ10336 Drosophila virilis FBgn0197622 N 0.761
GD19237 Drosophila simulans FBgn0190742 N 0.761
GK14167 Drosophila willistoni FBgn0216173 N 0.761
GM17877 Drosophila sechellia FBgn0172784 N 0.761
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.761
SB05G004860 Sorghum bicolor Sb05g004860 N 0.761
GE25546 Drosophila yakuba FBgn0242611 N 0.761
GG22991 Drosophila erecta FBgn0115148 N 0.761
CstF-64 Drosophila melanogaster FBgn0027841 N 0.761
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.761
GL24357 Drosophila persimilis FBgn0161947 N 0.761
GF16912 Drosophila ananassae FBgn0093932 N 0.761
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.761
GH18352 Drosophila grimshawi FBgn0125820 N 0.761
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.761
GI23336 Drosophila mojavensis FBgn0146063 N 0.761
s_451557 Phytophthora sojae s_451557 N 0.746
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.746
AGAP004414 Anopheles gambiae AGAP004414 N 0.746
MDP0000208337 Malus x domestica MDP0000208337 N 0.746
gw1.36.17.1 Physcomitrella patens gw1.36.17.1 N 0.746
SNAPOd2T00016915001 Oikopleura dioica SNAPOd2T00016915001 N 0.746
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.732
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.732
PITG_14249 Phytophthora infestans PITG_14249 N 0.732
BGIOSIBCE033690 Oryza indica BGIOSIBCE033690 N 0.732
PHUM441150 Pediculus humanus PHUM441150 N 0.704
estExt_Genewise1.C_230050 Postia placenta estExt_Genewise1.C_230050 N 0.704