CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pg.C_90049
(
Trichoderma atroviride
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh1_pg.C_90049
T50646_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_90049
RRM
78
147
LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMATLNGRRVHQSEIR
estExt_fgenesh1_pg.C_90049
RRM
168
238
IFVGDLSNEVNDDILHQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIR
estExt_fgenesh1_pg.C_90049
RRM
294
358
CYVGNLTPYTTHTDVVPLFQNFGFVVESRFQADRGFAFIKMDTHENAAMAICQMNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Trichoderma atroviride
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPC1
Homo sapiens
ENSG00000070756
D
0.000
PABPC4
Homo sapiens
ENSG00000090621
D
0.000
PABPC3
Homo sapiens
ENSG00000151846
D
0.000
ENSOPRG00000009667
Ochotona princeps
ENSOPRG00000009667
I
0.000
Pabpc3
Rattus norvegicus
ENSRNOG00000017367
I
0.000
D3ZEY8_RAT
Rattus norvegicus
ENSRNOG00000028592
I
0.000
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.000
ENSSSCG00000006063
Sus scrofa
ENSSSCG00000006063
I
0.000
PABPC1L
Spermophilus tridecemlineatus
ENSSTOG00000003739
I
0.000
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.000
PABPC1L
Taeniopygia guttata
ENSTGUG00000005114
I
0.000
PABPC1
Taeniopygia guttata
ENSTGUG00000012067
I
0.000
ENSTNIG00000009153
Tetraodon nigroviridis
ENSTNIG00000009153
I
0.000
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.000
Pabpc2
Rattus norvegicus
ENSRNOG00000014527
I
0.000
PABPC4
Ochotona princeps
ENSOPRG00000011984
I
0.000
PABPC3
Oryzias latipes
ENSORLG00000002691
I
0.000
ENSORLG00000003008
Oryzias latipes
ENSORLG00000003008
I
0.000
PABPC4
Oryzias latipes
ENSORLG00000017479
I
0.000
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.000
ENSPPYG00000005219
Pongo pygmaeus
ENSPPYG00000005219
I
0.000
ENSPPYG00000018790
Pongo pygmaeus
ENSPPYG00000018790
I
0.000
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.000
XR_023909.1
Pan troglodytes
ENSPTRG00000020475
I
0.000
Q2VIP2_PANTR
Pan troglodytes
ENSPTRG00000022593
I
0.000
ENSPVAG00000016640
Pteropus vampyrus
ENSPVAG00000016640
I
0.000
Pabpc1
Rattus norvegicus
ENSRNOG00000008639
I
0.000
PABPC3
Tetraodon nigroviridis
ENSTNIG00000013307
I
0.000
PABPC4
Tetraodon nigroviridis
ENSTNIG00000016902
I
0.000
AAH71118
Xenopus laevis
AAH71118
I
0.000
AAH72110
Xenopus laevis
AAH72110
I
0.000
AAH73435
Xenopus laevis
AAH73435
I
0.000
AAH80020
Xenopus laevis
AAH80020
I
0.000
AAI08463
Xenopus laevis
AAI08463
I
0.000
AAK29408
Xenopus laevis
AAK29408
I
0.000
CAA40721
Xenopus laevis
CAA40721
I
0.000
P20965
Xenopus laevis
P20965
I
0.000
Q6GR16
Xenopus laevis
Q6GR16
I
0.000
Q6IP09
Xenopus laevis
Q6IP09
I
0.000
AAH52100
Xenopus laevis
AAH52100
I
0.000
AAA60936
Xenopus laevis
AAA60936
I
0.000
Ame_R019277
Ailuropoda melanoleuca
Ame_R019277
I
0.000
ENSTRUG00000003767
Takifugu rubripes
ENSTRUG00000003767
I
0.000
Q8QGJ7_FUGRU
Takifugu rubripes
ENSTRUG00000005907
I
0.000
PABPC1L
Takifugu rubripes
ENSTRUG00000011085
I
0.000
PABPC3
Takifugu rubripes
ENSTRUG00000011577
I
0.000
ENSTSYG00000004229
Tarsius syrichta
ENSTSYG00000004229
I
0.000
ENSTTRG00000004689
Tursiops truncatus
ENSTTRG00000004689
I
0.000
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.000
pabpc4
Xenopus tropicalis
ENSXETG00000010946
I
0.000
pabpc1l
Xenopus tropicalis
ENSXETG00000022831
I
0.000
Ame_R001741
Ailuropoda melanoleuca
Ame_R001741
I
0.000
Q98SP8
Xenopus laevis
Q98SP8
I
0.000
PABPC1L
Anolis carolinensis
ENSACAG00000011841
I
0.000
pabpc4
Danio rerio
ENSDARG00000059259
I
0.000
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.000
PABPC4
Erinaceus europaeus
ENSEEUG00000002962
I
0.000
PABPC1L
Gasterosteus aculeatus
ENSGACG00000002792
I
0.000
PABPC3
Gasterosteus aculeatus
ENSGACG00000003572
I
0.000
ENSGACG00000003771
Gasterosteus aculeatus
ENSGACG00000003771
I
0.000
PABPC4
Gasterosteus aculeatus
ENSGACG00000007179
I
0.000
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.000
PABPC1L
Gallus gallus
ENSGALG00000004123
I
0.000
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.000
pabpc1b
Danio rerio
ENSDARG00000021140
I
0.000
pabpc1a
Danio rerio
ENSDARG00000017219
I
0.000
ENSACAG00000016470
Anolis carolinensis
ENSACAG00000016470
I
0.000
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.000
ENSCAFG00000000567
Canis familiaris
ENSCAFG00000000567
I
0.000
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.000
ENSACAG00000002544
Anolis carolinensis
ENSACAG00000002544
I
0.000
A6MKJ4_CALJA
Callithrix jacchus
ENSCJAG00000002512
I
0.000
LOC100413032
Callithrix jacchus
ENSCJAG00000015833
I
0.000
LOC100411130
Callithrix jacchus
ENSCJAG00000018953
I
0.000
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.000
pabpc1l
Danio rerio
ENSDARG00000002597
I
0.000
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.000
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.000
ENSLAFG00000013994
Loxodonta africana
ENSLAFG00000013994
I
0.000
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.000
Pabpc1
Mus musculus
ENSMUSG00000022283
I
0.000
Pabpc6
Mus musculus
ENSMUSG00000046173
I
0.000
Pabpc2
Mus musculus
ENSMUSG00000051732
I
0.000
Gm10110
Mus musculus
ENSMUSG00000062093
I
0.000
ENSOANG00000007307
Ornithorhynchus anatinus
ENSOANG00000007307
I
0.000
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.000
PABPC4
Oryctolagus cuniculus
ENSOCUG00000000562
I
0.000
ENSOCUG00000004354
Oryctolagus cuniculus
ENSOCUG00000004354
I
0.000
ENSOCUG00000023935
Oryctolagus cuniculus
ENSOCUG00000023935
I
0.000
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.000
XM_001367383.1
Monodelphis domestica
ENSMODG00000017105
I
0.000
PABPC1L
Monodelphis domestica
ENSMODG00000016198
I
0.000
PABPC1L
Meleagris gallopavo
ENSMGAG00000003674
I
0.000
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.000
ENSMICG00000016633
Microcebus murinus
ENSMICG00000016633
I
0.000
ENSMLUG00000012245
Myotis lucifugus
ENSMLUG00000012245
I
0.000
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.000
PABPC1
Macaca mulatta
ENSMMUG00000017786
I
0.000
PABPC3
Macaca mulatta
ENSMMUG00000020835
I
0.000
XR_030308.1
Monodelphis domestica
ENSMODG00000006222
I
0.000
ENSMODG00000012040
Monodelphis domestica
ENSMODG00000012040
I
0.000
XM_001373066.1
Monodelphis domestica
ENSMODG00000013156
I
0.000
ENSCHOG00000008178
Choloepus hoffmanni
ENSCHOG00000008178
N
0.000