estExt_fgenesh1_pg.C_90049 (Trichoderma atroviride)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_90049 T50646_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_90049 RRM 78 147
estExt_fgenesh1_pg.C_90049 RRM 168 238
estExt_fgenesh1_pg.C_90049 RRM 294 358

Links

Other RRM family RBPs
Other Trichoderma atroviride RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1 Homo sapiens ENSG00000070756 D 0.000
PABPC4 Homo sapiens ENSG00000090621 D 0.000
PABPC3 Homo sapiens ENSG00000151846 D 0.000
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.000
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.000
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.000
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.000
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.000
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.000
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.000
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.000
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.000
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.000
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.000
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.000
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.000
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.000
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.000
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.000
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.000
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.000
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.000
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.000
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.000
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.000
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.000
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.000
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.000
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.000
AAH71118 Xenopus laevis AAH71118 I 0.000
AAH72110 Xenopus laevis AAH72110 I 0.000
AAH73435 Xenopus laevis AAH73435 I 0.000
AAH80020 Xenopus laevis AAH80020 I 0.000
AAI08463 Xenopus laevis AAI08463 I 0.000
AAK29408 Xenopus laevis AAK29408 I 0.000
CAA40721 Xenopus laevis CAA40721 I 0.000
P20965 Xenopus laevis P20965 I 0.000
Q6GR16 Xenopus laevis Q6GR16 I 0.000
Q6IP09 Xenopus laevis Q6IP09 I 0.000
AAH52100 Xenopus laevis AAH52100 I 0.000
AAA60936 Xenopus laevis AAA60936 I 0.000
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.000
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.000
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.000
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.000
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.000
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.000
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.000
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.000
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.000
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.000
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.000
Q98SP8 Xenopus laevis Q98SP8 I 0.000
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.000
pabpc4 Danio rerio ENSDARG00000059259 I 0.000
LOC100054235 Equus caballus ENSECAG00000009396 I 0.000
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.000
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.000
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.000
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.000
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.000
PABPC4 Gallus gallus ENSGALG00000003800 I 0.000
PABPC1L Gallus gallus ENSGALG00000004123 I 0.000
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.000
pabpc1b Danio rerio ENSDARG00000021140 I 0.000
pabpc1a Danio rerio ENSDARG00000017219 I 0.000
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.000
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.000
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.000
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.000
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.000
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.000
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.000
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.000
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.000
pabpc1l Danio rerio ENSDARG00000002597 I 0.000
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.000
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.000
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.000
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.000
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.000
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.000
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.000
Gm10110 Mus musculus ENSMUSG00000062093 I 0.000
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.000
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.000
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.000
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.000
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.000
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.000
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.000
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.000
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.000
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.000
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.000
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.000
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.000
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.000
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.000
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.000
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.000
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.000
ENSCHOG00000008178 Choloepus hoffmanni ENSCHOG00000008178 N 0.000