MDP0000792725 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000792725 T57723_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000792725 RRM 152 220
MDP0000792725 RRM 258 327

Links

Other RRM family RBPs
Other Malus x domestica RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK11606.1 Cannabis sativa PK11606.1 N 0.729
Cucsa.250370 Cucumis sativus Cucsa.250370 N 0.856
Glyma02g44330.1 Glycine max Glyma02g44330.1 N 0.764
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.827
Glyma14g04480.1 Glycine max Glyma14g04480.1 N 0.764
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.842
mgf002509m Mimulus guttatus mgf002509m N 0.748
mgf005672m Mimulus guttatus mgf005672m N 0.748
mgf012484m Mimulus guttatus mgf012484m N 0.748
mgf019210m Mimulus guttatus mgf019210m N 0.734
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.727
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.736
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.813
chr2.CM0031.350.nc Lotus japonicus chr2.CM0031.350.nc N 0.736
MDP0000218409 Malus x domestica MDP0000218409 N 0.950
MDP0000381936 Malus x domestica MDP0000381936 N 1.000
MDP0000905699 Malus x domestica MDP0000905699 N 0.950
ppa004648m Prunus persica ppa004648m N 0.921
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.806
cassava6906.valid.m1 Manihot esculenta cassava6906.valid.m1 N 0.791
PK27017.1 Cannabis sativa PK27017.1 N 0.820
AT2G41060 Arabidopsis thaliana AT2G41060-TAIR-G N 0.784
UBA2A Arabidopsis thaliana AT3G56860-TAIR-G N 0.835
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 0.700
XM_002878068.1 Arabidopsis lyrata fgenesh2_kg.5__2117__AT3G56860.3 N 0.835
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.791
LOC_Os01g16090 Oryza sativa LOC_Os01g16090 N 0.700
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.813
B9IHG4_POPTR Populus trichocarpa POPTR_0016s02440 N 0.820
XM_002879859.1 Arabidopsis lyrata scaffold_402914.1 N 0.799
30006.m000276 Ricinus communis 30006.m000276 N 0.856
30099.m001684 Ricinus communis 30099.m001684 N 0.849
cassava22353.valid.m1 Manihot esculenta cassava22353.valid.m1 N 0.763
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 0.763
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 0.763
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.755
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.755
ppa023522m Prunus persica ppa023522m N 0.748