MBNL1 (Takifugu rubripes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTRUG00000001892 T03516_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.957
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.957
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000004352 CCCH ZF 19 43
ENSTRUP00000004352 CCCH ZF 60 75
ENSTRUP00000004352 CCCH ZF 186 212
ENSTRUP00000004352 CCCH ZF 223 246
ENSTRUP00000004353 CCCH ZF 16 40
ENSTRUP00000004353 CCCH ZF 57 72
ENSTRUP00000004353 CCCH ZF 183 209
ENSTRUP00000004353 CCCH ZF 220 243
ENSTRUP00000004354 CCCH ZF 16 40
ENSTRUP00000004354 CCCH ZF 57 72
ENSTRUP00000004354 CCCH ZF 183 209
ENSTRUP00000004354 CCCH ZF 220 243
ENSTRUP00000004355 CCCH ZF 16 40
ENSTRUP00000004355 CCCH ZF 57 72
ENSTRUP00000004355 CCCH ZF 113 138
ENSTRUP00000004355 CCCH ZF 149 172
ENSTRUP00000004356 CCCH ZF 16 40
ENSTRUP00000004356 CCCH ZF 57 72
ENSTRUP00000004356 CCCH ZF 183 209
ENSTRUP00000004356 CCCH ZF 220 243
ENSTRUP00000004357 CCCH ZF 16 40
ENSTRUP00000004357 CCCH ZF 57 72
ENSTRUP00000004357 CCCH ZF 183 209
ENSTRUP00000004357 CCCH ZF 220 243
ENSTRUP00000004358 CCCH ZF 24 48
ENSTRUP00000004358 CCCH ZF 65 80
ENSTRUP00000004358 CCCH ZF 191 217
ENSTRUP00000004358 CCCH ZF 228 251

Links

Other CCCH ZF family RBPs
Other Takifugu rubripes RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49948 Xenopus laevis AAA49948 I 0.000
AAB59951 Xenopus laevis AAB59951 I 0.000
AAH43750 Xenopus laevis AAH43750 I 0.000
AAH46692 Xenopus laevis AAH46692 I 0.000
AAI06633 Xenopus laevis AAI06633 I 0.000
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.000
CBF67577 Xenopus laevis CBF67577 I 0.000
CBU92450 Xenopus laevis CBU92450 I 0.000
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.000
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.000
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.000
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.000
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.000
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.000
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.000
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.000
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.000
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.000
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.000
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.000
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.000
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.000
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.000
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.000
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.000
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.000
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.000
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.000
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.000
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.000
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.000
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.000
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.000
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.000
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.000
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.000
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.000
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.000
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.000
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.000
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.000
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.000
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.000
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.000
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.000
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.000
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.000
LOC100068539 Equus caballus ENSECAG00000000782 I 0.000
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.000
LOC516616 Bos taurus ENSBTAG00000002284 I 0.000
LOC538435 Bos taurus ENSBTAG00000038680 I 0.000
P51989 Xenopus laevis P51989 I 0.000
P51990 Xenopus laevis P51990 I 0.000
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.000
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.000