MBNL1 (Takifugu rubripes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTRUG00000001892 T03516_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.957
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.957
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000004352 CCCH ZF 19 43
ENSTRUP00000004352 CCCH ZF 60 75
ENSTRUP00000004352 CCCH ZF 186 212
ENSTRUP00000004352 CCCH ZF 223 246
ENSTRUP00000004353 CCCH ZF 16 40
ENSTRUP00000004353 CCCH ZF 57 72
ENSTRUP00000004353 CCCH ZF 183 209
ENSTRUP00000004353 CCCH ZF 220 243
ENSTRUP00000004354 CCCH ZF 16 40
ENSTRUP00000004354 CCCH ZF 57 72
ENSTRUP00000004354 CCCH ZF 183 209
ENSTRUP00000004354 CCCH ZF 220 243
ENSTRUP00000004355 CCCH ZF 16 40
ENSTRUP00000004355 CCCH ZF 57 72
ENSTRUP00000004355 CCCH ZF 113 138
ENSTRUP00000004355 CCCH ZF 149 172
ENSTRUP00000004356 CCCH ZF 16 40
ENSTRUP00000004356 CCCH ZF 57 72
ENSTRUP00000004356 CCCH ZF 183 209
ENSTRUP00000004356 CCCH ZF 220 243
ENSTRUP00000004357 CCCH ZF 16 40
ENSTRUP00000004357 CCCH ZF 57 72
ENSTRUP00000004357 CCCH ZF 183 209
ENSTRUP00000004357 CCCH ZF 220 243
ENSTRUP00000004358 CCCH ZF 24 48
ENSTRUP00000004358 CCCH ZF 65 80
ENSTRUP00000004358 CCCH ZF 191 217
ENSTRUP00000004358 CCCH ZF 228 251

Links

Other CCCH ZF family RBPs
Other Takifugu rubripes RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A3F958_CHICK Gallus gallus ENSGALG00000016890 I 0.880
A5HMN7_CHICK Gallus gallus ENSGALG00000006066 I 0.902
A5PKK4_BOVIN Bos taurus ENSBTAG00000018313 I 0.891
Ame_R002664 Ailuropoda melanoleuca Ame_R002664 I 0.891
Ame_R011226 Ailuropoda melanoleuca Ame_R011226 I 0.880
ENSGACG00000004222 Gasterosteus aculeatus ENSGACG00000004222 I 0.848
ENSGACG00000015105 Gasterosteus aculeatus ENSGACG00000015105 I 0.859
ENSORLG00000005419 Oryzias latipes ENSORLG00000005419 I 0.859
ENSPPYG00000005456 Pongo pygmaeus ENSPPYG00000005456 I 0.891
ENSPPYG00000014218 Pongo pygmaeus ENSPPYG00000014218 I 0.957
ENSPPYG00000020726 Pongo pygmaeus ENSPPYG00000020726 I 0.880
ENSTNIG00000013977 Tetraodon nigroviridis ENSTNIG00000013977 I 0.848
ENSTRUG00000017351 Takifugu rubripes ENSTRUG00000017351 I 0.868
LOC100050018 Equus caballus ENSECAG00000024349 I 0.957
LOC100054316 Equus caballus ENSECAG00000021076 I 0.880
LOC100392264 Callithrix jacchus ENSCJAG00000001054 I 0.957
LOC100397507 Callithrix jacchus ENSCJAG00000004080 I 0.870
LOC100403733 Callithrix jacchus ENSCJAG00000004294 I 0.891
MBN2A_FUGRU Takifugu rubripes ENSTRUG00000010220 I 0.859
MBNL1 Takifugu rubripes ENSTRUG00000013858 I 0.924
MBNL1 Macropus eugenii ENSMEUG00000006617 I 0.912
MBNL1 Loxodonta africana ENSLAFG00000017683 I 0.957
MBNL1 Gorilla gorilla ENSGGOG00000009430 I 0.957
MBNL1 Taeniopygia guttata ENSTGUG00000011341 I 0.957
MBNL1 Spermophilus tridecemlineatus ENSSTOG00000009457 I 0.957
MBNL1 Myotis lucifugus ENSMLUG00000014029 I 0.946
MBNL1 Ochotona princeps ENSOPRG00000009633 I 0.957
MBNL1 Oryzias latipes ENSORLG00000005925 I 0.978
MBNL1 Ornithorhynchus anatinus ENSOANG00000007992 I 0.771
MBNL1 Oryzias latipes ENSORLG00000015858 I 0.935
MBNL1 Pteropus vampyrus ENSPVAG00000002760 I 0.957
MBNL1 Monodelphis domestica ENSMODG00000015838 I 0.946
MBNL1 Macaca mulatta ENSMMUG00000015910 I 0.957
MBNL1 Pan troglodytes ENSPTRG00000015542 I 0.957
MBNL1 Oryctolagus cuniculus ENSOCUG00000007601 I 0.957
MBNL1 Dasypus novemcinctus ENSDNOG00000012815 I 0.957
MBNL1 Tarsius syrichta ENSTSYG00000010491 I 0.957
Mbnl1 Mus musculus ENSMUSG00000027763 I 0.957
MBNL1 Cavia porcellus ENSCPOG00000011516 I 0.957
MBNL1 Erinaceus europaeus ENSEEUG00000009449 I 0.957
MBNL1 Tursiops truncatus ENSTTRG00000009991 I 0.957
MBNL1 Canis familiaris ENSCAFG00000008603 I 0.957
MBNL1 Homo sapiens ENSG00000152601 D 0.957
MBNL1 Gasterosteus aculeatus ENSGACG00000010253 I 0.967
MBNL1 Vicugna pacos ENSVPAG00000006162 I 0.957
MBNL1 Anolis carolinensis ENSACAG00000008014 I 0.957
mbnl1 Xenopus tropicalis ENSXETG00000021655 I 0.946
MBNL1 Tetraodon nigroviridis ENSTNIG00000003878 I 0.924
MBNL1 Gasterosteus aculeatus ENSGACG00000015003 I 0.935
MBNL1_CHICK Gallus gallus ENSGALG00000010361 I 0.957
MBNL2 Procavia capensis ENSPCAG00000005151 I 0.891
MBNL2 Vicugna pacos ENSVPAG00000010696 I 0.891
MBNL2 Tursiops truncatus ENSTTRG00000008491 I 0.891
MBNL2 Pan troglodytes ENSPTRG00000005982 I 0.891
MBNL2 Taeniopygia guttata ENSTGUG00000011104 I 0.880
MBNL2 Tupaia belangeri ENSTBEG00000005178 I 0.868
MBNL2 Spermophilus tridecemlineatus ENSSTOG00000013149 I 0.891
MBNL2 Sorex araneus ENSSARG00000002868 I 0.891
Mbnl2 Rattus norvegicus ENSRNOG00000010737 I 0.880
MBNL2 Pteropus vampyrus ENSPVAG00000003263 I 0.891
MBNL2 Sus scrofa ENSSSCG00000009505 I 0.891
MBNL2 Tarsius syrichta ENSTSYG00000004574 I 0.880
MBNL2 Ochotona princeps ENSOPRG00000007427 I 0.891
MBNL2 Myotis lucifugus ENSMLUG00000010920 I 0.846
mbnl2 Danio rerio ENSDARG00000018460 I 0.859
MBNL2 Meleagris gallopavo ENSMGAG00000014904 I 0.880
MBNL2 Homo sapiens ENSG00000139793 I 0.891
MBNL2 Macropus eugenii ENSMEUG00000016143 I 0.857
MBNL2 Choloepus hoffmanni ENSCHOG00000000049 I 0.880
MBNL2 Erinaceus europaeus ENSEEUG00000006209 I 0.870
MBNL2 Loxodonta africana ENSLAFG00000014497 I 0.891
MBNL2 Echinops telfairi ENSETEG00000003784 I 0.891
MBNL2 Gorilla gorilla ENSGGOG00000008349 I 0.891
MBNL2 Cavia porcellus ENSCPOG00000010320 I 0.891
MBNL2 Anolis carolinensis ENSACAG00000000969 I 0.880
Mbnl2 Mus musculus ENSMUSG00000022139 I 0.880
MBNL2 Ornithorhynchus anatinus ENSOANG00000014911 I 0.891
MBNL2 Canis familiaris ENSCAFG00000005523 I 0.891
MBNL2 Monodelphis domestica ENSMODG00000008566 I 0.880
MBNL2 Oryctolagus cuniculus ENSOCUG00000000220 I 0.891
MBNL3 Homo sapiens ENSG00000076770 I 0.880
MBNL3 Sorex araneus ENSSARG00000006397 I 0.870
MBNL3 Bos taurus ENSBTAG00000014088 I 0.880
MBNL3 Anolis carolinensis ENSACAG00000009557 I 0.902
Mbnl3 Dipodomys ordii ENSDORG00000012854 I 0.848
MBNL3 Dasypus novemcinctus ENSDNOG00000016518 I 0.891
mbnl3 Xenopus tropicalis ENSXETG00000005409 I 0.902
MBNL3 Canis familiaris ENSCAFG00000018841 I 0.880
MBNL3 Tursiops truncatus ENSTTRG00000016841 I 0.870
MBNL3 Vicugna pacos ENSVPAG00000004743 I 0.880
MBNL3 Tetraodon nigroviridis ENSTNIG00000016812 I 0.859
mbnl3 Danio rerio ENSDARG00000016085 I 0.880
MBNL3 Gasterosteus aculeatus ENSGACG00000017015 I 0.859
MBNL3 Oryzias latipes ENSORLG00000002183 I 0.826
MBNL3 Ornithorhynchus anatinus ENSOANG00000011697 I 0.902
Mbnl3 Mus musculus ENSMUSG00000036109 I 0.859
MBNL3 Monodelphis domestica ENSMODG00000015304 I 0.902
MBNL3 Macaca mulatta ENSMMUG00000003071 I 0.880
MBNL3 Myotis lucifugus ENSMLUG00000016240 I 0.880
MBNL3 Oryctolagus cuniculus ENSOCUG00000014979 I 0.880
MBNL3 Microcebus murinus ENSMICG00000017340 I 0.846
MBNL3 Pteropus vampyrus ENSPVAG00000006115 I 0.789
Mbnl3 Rattus norvegicus ENSRNOG00000002487 I 0.825
MBNL3 Meleagris gallopavo ENSMGAG00000003064 I 0.902
MBNL3 Spermophilus tridecemlineatus ENSSTOG00000006715 I 0.891
MBNL3 Macropus eugenii ENSMEUG00000001183 I 0.902
MBNL3 Loxodonta africana ENSLAFG00000011822 I 0.880
MBNL3 Taeniopygia guttata ENSTGUG00000002999 I 0.902
MBNL3 Gorilla gorilla ENSGGOG00000007756 I 0.880
MBNL3_FUGRU Takifugu rubripes ENSTRUG00000012666 I 0.859
XP_001194015.1 Strongylocentrotus purpuratus XP_001194015.1 I 0.774