CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_Genewise1Plus.C_20041
(
Sporobolomyces roseus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
estExt_Genewise1Plus.C_20041
T20961_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_20041
KH
176
232
FVKRRQRLLGPGGSTLKAIELLTQCYVLVQGNTVAAMGGHKGLKEVRKIVIDCMKNI
Links
Other
KH
family RBPs
Other
Sporobolomyces roseus
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
D3ZSC3_RAT
Rattus norvegicus
ENSRNOG00000027915
N
0.000
ENSBTAG00000012763
Bos taurus
ENSBTAG00000012763
N
0.000
ENSCAFG00000006386
Canis familiaris
ENSCAFG00000006386
I
0.000
ENSCAFG00000007918
Canis familiaris
ENSCAFG00000007918
I
0.000
ENSCAFG00000010467
Canis familiaris
ENSCAFG00000010467
I
0.000
ENSCAFG00000013932
Canis familiaris
ENSCAFG00000013932
I
0.000
ENSCAFG00000015319
Canis familiaris
ENSCAFG00000015319
I
0.000
ENSCAFG00000016707
Canis familiaris
ENSCAFG00000016707
I
0.000
ENSCAFG00000017240
Canis familiaris
ENSCAFG00000017240
N
0.000
ENSCAFG00000017467
Canis familiaris
ENSCAFG00000017467
I
0.000
ENSCAFG00000024812
Canis familiaris
ENSCAFG00000024812
I
0.000
ENSCPOG00000020972
Cavia porcellus
ENSCPOG00000020972
N
0.000
ENSETEG00000007429
Echinops telfairi
ENSETEG00000007429
N
0.000
ENSETEG00000012394
Echinops telfairi
ENSETEG00000012394
N
0.000
ENSMMUG00000017582
Macaca mulatta
ENSMMUG00000017582
N
0.000
ENSRNOG00000042093
Rattus norvegicus
ENSRNOG00000042093
I
0.000
XM_852631.1
Canis familiaris
ENSCAFG00000023680
I
0.000