ENSCAFG00000007918 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000007918 T35058_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.762
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.762
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.762
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.755
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000011711 RRM 16 82
ENSCAFP00000011711 RRM 104 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.778
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.774
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.774
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.774
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.774
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.774
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.774
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.774
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.774
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.774
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.774
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.774
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.774
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.774
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.774
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.774
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.774
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.774
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.774
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.774
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.774
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.774
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.774
HNRNPA1 Homo sapiens ENSG00000135486 D 0.774
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.774
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.774
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.774
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.774
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.774
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.774
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.774
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.774
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.772
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.772
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.767
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.767
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.767
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.767
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.767
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.767
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.767
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.766
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.760
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.760
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.760
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.760
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.760
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.760
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.760
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.760
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.760
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.760
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.760
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.760
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.760
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.759
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.759
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.757
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.757
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.753
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.753
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.753
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.753
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.753
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.753
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.753
LOC785445 Bos taurus ENSBTAG00000025621 I 0.753
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.753
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.752
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.748
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.748
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.748
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.747
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.747
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.747
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.747
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.747
LOC100054206 Equus caballus ENSECAG00000006699 I 0.745
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.745
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.745
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.745
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.743
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.741
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.740
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.740
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.740
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.740
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.738
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.738
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.738
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.738
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.738
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.736
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.734
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.733
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.733
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.733
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.733
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.733
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.731
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.731
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.728
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.727
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.727
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.726
CBF67672 Xenopus laevis CBF67672 I 0.726
AAH45260 Xenopus laevis AAH45260 I 0.726
AAH72090 Xenopus laevis AAH72090 I 0.726
CBU92546 Xenopus laevis CBU92546 I 0.726
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.726
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.726
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.725
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.724
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.724
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.724
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.724
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.724
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.724
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.720
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.720
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.720
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.719
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.719
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.719
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.719
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.719
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.719
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.719
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.717
ENSCAFG00000010467 Canis familiaris ENSCAFG00000010467 I 0.716
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.713
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.713
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.713
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.713
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.713
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.712
CBU92428 Xenopus laevis CBU92428 I 0.712
P17130 Xenopus laevis P17130 I 0.712
CBF67555 Xenopus laevis CBF67555 I 0.712
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.712
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.712
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.712
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.712
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.712
AAA49742 Xenopus laevis AAA49742 I 0.712
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.712
AAA49741 Xenopus laevis AAA49741 I 0.712
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.712
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.712
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.710
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.710
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.709
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.706
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.706
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.705
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.705
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.705
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.705
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.705
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.705
ENSCAFG00000017180 Canis familiaris ENSCAFG00000017180 N 0.704
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.703
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.703
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.701
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.700