ENSRNOG00000042093 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000042093 T41239_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.843
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.843
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.843
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.836
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000043660 RRM 23 77
ENSRNOP00000043660 RRM 110 179

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

171 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.859
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.852
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.844
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.825
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.820
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.817
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.816
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.814
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.810
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.810
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.810
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.810
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.810
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.810
HNRNPA1 Homo sapiens ENSG00000135486 D 0.810
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.810
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.810
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.810
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.810
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.810
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.810
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.810
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.810
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.810
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.810
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.810
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.810
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.810
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.810
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.810
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.810
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.810
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.810
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.810
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.809
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.803
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.803
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.803
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.803
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.803
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.803
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.803
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.803
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.803
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.803
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.800
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.800
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.797
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.797
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.796
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.796
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.796
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.796
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.796
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.796
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.796
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.796
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.796
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.793
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.789
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.789
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.789
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.789
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.789
LOC100054206 Equus caballus ENSECAG00000006699 I 0.786
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.784
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.782
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.782
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.782
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.782
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.782
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.782
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.779
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.779
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.776
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.775
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.775
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.775
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.775
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.775
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.775
LOC785445 Bos taurus ENSBTAG00000025621 I 0.775
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.773
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.771
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.771
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.768
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.768
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.768
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.764
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.764
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.763
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.763
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.761
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.761
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.761
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.761
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.761
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.759
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.754
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.754
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.754
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.754
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.754
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.754
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.754
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.752
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.750
ENSBTAG00000012502 Bos taurus ENSBTAG00000012502 I 0.748
AAH45260 Xenopus laevis AAH45260 I 0.746
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.746
CBU92546 Xenopus laevis CBU92546 I 0.746
AAH72090 Xenopus laevis AAH72090 I 0.746
CBF67672 Xenopus laevis CBF67672 I 0.746
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.739
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.739
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.739
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.739
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.732
AAA49741 Xenopus laevis AAA49741 I 0.732
AAA49742 Xenopus laevis AAA49742 I 0.732
CBU92428 Xenopus laevis CBU92428 I 0.732
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.732
CBF67555 Xenopus laevis CBF67555 I 0.732
P17130 Xenopus laevis P17130 I 0.732
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.732
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.732
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.732
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.729
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.725
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.725
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.723
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.721
ENSCAFG00000017240 Canis familiaris ENSCAFG00000017240 N 0.721
ENSCAFG00000017467 Canis familiaris ENSCAFG00000017467 I 0.721
ENSCAFG00000010467 Canis familiaris ENSCAFG00000010467 I 0.721
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.720
ENSCAFG00000017180 Canis familiaris ENSCAFG00000017180 N 0.720
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.718
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.718
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.718
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.718
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.718
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.718
P51968 Xenopus laevis P51968 I 0.718
AAA49949 Xenopus laevis AAA49949 I 0.718
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.718
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.718
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.718
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.718
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.718
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.716
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.714
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.711
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.711
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.711
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.711
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.711
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.711
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.708
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.706
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.705
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.705
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.704
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.704
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.704
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.704
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.704
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.702
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.701
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.700