XP_001187223.1 (Strongylocentrotus purpuratus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 XP_001187223.1 T25266_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.842
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.842
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.842
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.839
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.839
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.824
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.824
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.824
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.824
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.824
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.824
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.824
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.817
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.817
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001187223.1 PUF 808 842
XP_001187223.1 PUF 844 877
XP_001187223.1 PUF 880 914
XP_001187223.1 PUF 916 950
XP_001187223.1 PUF 952 986
XP_001187223.1 PUF 988 1022
XP_001187223.1 PUF 1024 1058
XP_001187223.1 PUF 1064 1098

Links

Other PUF family RBPs
Other Strongylocentrotus purpuratus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACLA_010070 Aspergillus clavatus CADACLAG00001255 N 0.000
AFUA_5G06760 Aspergillus fumigatus CADAFUAG00006062 N 0.000
ANIA_02245 Aspergillus nidulans CADANIAG00008932 N 0.000
ARB_07115 Arthroderma benhamiae ARB_07115 N 0.000
BC1G_06564 Botrytis cinerea BC1G_06564 N 0.000
BDBG_03718 Blastomyces dermatitidis BDBG_03718 N 0.000
CHGG_07724 Chaetomium globosum CHGG_07724 N 0.000
CIMG_05989 Coccidioides immitis CIMG_05989 N 0.000
CPSG_06979 Coccidioides posadasii CPSG_06979 N 0.000
cwf2 Schizosaccharomyces pombe SPAC3A12.11c N 0.000
estExt_fgenesh2_pm.C_20569 Thielavia terrestris estExt_fgenesh2_pm.C_20569 N 0.000
estExt_fgenesh3_pm.C_10433 Neurospora discreta estExt_fgenesh3_pm.C_10433 N 0.000
estExt_Genewise1.C_chr_81258 Mycosphaerella graminicola estExt_Genewise1.C_chr_81258 N 0.000
estExt_Genewise1Plus.C_130268 Cryphonectria parasitica estExt_Genewise1Plus.C_130268 N 0.000
estExt_Genewise1Plus.C_240300 Neurospora tetrasperma estExt_Genewise1Plus.C_240300 N 0.000
e_gw1.21.438.1 Mycosphaerella fijiensis e_gw1.21.438.1 N 0.000
e_gw1.3.641.1 Myceliophthora thermophila e_gw1.3.641.1 N 0.000
e_gw1.6.1129.1 Nectria haematococca e_gw1.6.1129.1 N 0.000
FOXG_07884 Fusarium oxysporum FOXG_07884 N 0.000
FVEG_04805 Fusarium verticillioides FVEG_04805 N 0.000
GLRG_03078 Colletotrichum graminicola GLRG_03078 N 0.000
MCYG_06871 Microsporum canis MCYG_06871 N 0.000
MGG_08641 Magnaporthe oryzae MGG_08641 N 0.000
MGYG_03738 Microsporum gypseum MGYG_03738 N 0.000
NCU01184 Neurospora crassa NCU01184 N 0.000
NFIA_036360 Neosartorya fischeri CADNFIAG00003276 N 0.000
PABG_06740 Paracoccidioides brasiliensis PABG_06740 N 0.000
Pa_2_10560 Podospora anserina Pa_2_10560 N 0.000
PMAA_084580 Penicillium marneffei PMAA_084580 N 0.000
SJAG_04898 Schizosaccharomyces japonicus SJAG_04898 N 0.000
SOCG_02324 Schizosaccharomyces octosporus SOCG_02324 N 0.000
SPOG_04952 Schizosaccharomyces cryophilus SPOG_04952 N 0.000
SS1G_00605 Sclerotinia sclerotiorum SS1G_00605 N 0.000
TEQG_02969 Trichophyton equinum TEQG_02969 N 0.000
TERG_04085 Trichophyton rubrum TERG_04085 N 0.000
TRV_04903 Trichophyton verrucosum TRV_04903 N 0.000
UREG_04374 Uncinocarpus reesii UREG_04374 N 0.000
VDAG_08466 Verticillium dahliae VDAG_08466 N 0.000
VDBG_00182 Verticillium albo atrum VDBG_00182 N 0.000