XP_001187223.1 (Strongylocentrotus purpuratus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 XP_001187223.1 T25266_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.842
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.842
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.842
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.839
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.839
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.824
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.824
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.824
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.824
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.824
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.824
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.824
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.817
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.817
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001187223.1 PUF 808 842
XP_001187223.1 PUF 844 877
XP_001187223.1 PUF 880 914
XP_001187223.1 PUF 916 950
XP_001187223.1 PUF 952 986
XP_001187223.1 PUF 988 1022
XP_001187223.1 PUF 1024 1058
XP_001187223.1 PUF 1064 1098

Links

Other PUF family RBPs
Other Strongylocentrotus purpuratus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 1.000
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.860
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.860
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.857
PUM2 Equus caballus ENSECAG00000021930 I 0.853
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.853
PUM2 Homo sapiens ENSG00000055917 D 0.853
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.853
PUM2 Sus scrofa ENSSSCG00000008600 I 0.853
PUM2 Bos taurus ENSBTAG00000011155 I 0.853
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.853
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.849
Pum2 Mus musculus ENSMUSG00000020594 D 0.849
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.849
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.849
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.846
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.846
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.842
PUM2 Canis familiaris ENSCAFG00000003839 I 0.842
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.842
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.842
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.842
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.839
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.839
AAEL012420 Aedes aegypti AAEL012420 I 0.839
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.839
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.839
PUM2 Oryzias latipes ENSORLG00000012611 I 0.835
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.835
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.835
GF18428 Drosophila ananassae FBgn0095446 I 0.832
AGAP003914 Anopheles gambiae AGAP003914 I 0.832
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.832
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.828
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.828
GK14049 Drosophila willistoni FBgn0216055 I 0.828
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.828
GI22503 Drosophila mojavensis FBgn0145231 I 0.828
GG17394 Drosophila erecta FBgn0109620 I 0.828
BAB20864 Xenopus laevis BAB20864 I 0.828
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.828
GE24797 Drosophila yakuba FBgn0241899 I 0.828
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.828
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.828
AAH80379 Xenopus laevis AAH80379 I 0.824
pum Drosophila melanogaster FBgn0003165 D 0.824
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.824
GM26283 Drosophila sechellia FBgn0181138 I 0.824
GJ10105 Drosophila virilis FBgn0197393 I 0.824
BAC57980 Xenopus laevis BAC57980 I 0.824
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.821
AAL14121 Xenopus laevis AAL14121 I 0.821
PUM1 Equus caballus ENSECAG00000021369 I 0.821
GH15257 Drosophila grimshawi FBgn0122732 I 0.821
PUM1 Microcebus murinus ENSMICG00000007713 I 0.821
GL22345 Drosophila persimilis FBgn0159937 I 0.817
PUM1 Oryzias latipes ENSORLG00000011482 I 0.817
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.817
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.817
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.817
PUM1 Bos taurus ENSBTAG00000018979 I 0.817
PUM1 Homo sapiens ENSG00000134644 D 0.817
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.814
Pum1 Mus musculus ENSMUSG00000028580 I 0.814
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.814
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.814
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.814
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.814
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.810
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.810
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.810
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.810
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.810
PUM1 Canis familiaris ENSCAFG00000011205 I 0.810
PUM1 Sorex araneus ENSSARG00000003055 I 0.806
PUM1 Sus scrofa ENSSSCG00000003591 I 0.806
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.803
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.803
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.799
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.799
PHUM490070 Pediculus humanus PHUM490070 I 0.799
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.799
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.799
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.796
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.796
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.781
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.775
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.742
105390 Helobdella robusta 105390 I 0.710