CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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VDBG_07004
(
Verticillium albo atrum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
VDBG_07004
T31473_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDBG_07004T0
RRM
54
122
LYIGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNQKGYNYGFVEYDDPGAAARAMQTLNGRRVHEIRV
VDBG_07004T0
RRM
142
212
IFVGDLSNEVNDEILSQAFAAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIR
VDBG_07004T0
RRM
268
332
VYVGNLTPYTTPNDVVPLFQNFGFVVESRFQADRGFAFIKMESHEAAAMAICQMNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Verticillium albo atrum
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB00309.1
Alternaria brassicicola
AB00309.1
N
0.803
ACLA_023580
Aspergillus clavatus
CADACLAG00002187
N
0.833
AFLA_067600
Aspergillus flavus
CADAFLAG00008184
N
0.847
AFUA_1G12000
Aspergillus fumigatus
CADAFUAG00007354
N
0.707
An08g04280
Aspergillus niger
CADANGAG00006749
N
0.828
ANIA_10164
Aspergillus nidulans
CADANIAG00001543
N
0.827
AO090001000353
Aspergillus oryzae
CADAORAG00000317
N
0.847
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.847
CHGG_05573
Chaetomium globosum
CHGG_05573
N
0.725
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.856
CPSG_01385
Coccidioides posadasii
CPSG_01385
N
0.860
EAT81850.2
Phaeosphaeria nodorum
EAT81850.2
N
0.808
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.874
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.913
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.841
estExt_Genewise1.C_11570
Cochliobolus heterostrophus C5
estExt_Genewise1.C_11570
N
0.803
estExt_Genewise1.C_140496
Mycosphaerella fijiensis
estExt_Genewise1.C_140496
N
0.833
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.884
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.874
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.922
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.927
e_gw1.2.1591.1
Mycosphaerella graminicola
e_gw1.2.1591.1
N
0.837
e_gw1.32.97.1
Trichoderma virens
e_gw1.32.97.1
N
0.927
fgenesh1_pm.00083_#_553
Aspergillus carbonarius
fgenesh1_pm.00083_#_553
N
0.823
FGSG_05417
Fusarium graminearum
FGSG_05417
N
0.927
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.922
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.922
GLRG_08449
Colletotrichum graminicola
GLRG_08449
N
0.932
GSTUMT00010135001
Tuber melanosporum
GSTUMT00010135001
N
0.845
HCAG_09244
Histoplasma capsulatum
HCAG_09244
N
0.763
MCYG_03737
Microsporum canis
MCYG_03737
N
0.841
MGYG_03339
Microsporum gypseum
MGYG_03339
N
0.821
NCU07874
Neurospora crassa
NCU07874
N
0.894
NFIA_013530
Neosartorya fischeri
CADNFIAG00000800
N
0.837
PABG_03400
Paracoccidioides brasiliensis
PABG_03400
N
0.850
Pa_7_10990
Podospora anserina
Pa_7_10990
N
0.889
Pc12g15120
Penicillium chrysogenum
Pc12g15120
N
0.817
PMAA_098010
Penicillium marneffei
PMAA_098010
N
0.827
PTRG_10065
Pyrenophora tritici repentis
PTRG_10065
N
0.803
SNOG_10456
Stagonospora nodorum
SNOG_10456
N
0.808
SS1G_03339
Sclerotinia sclerotiorum
SS1G_03339
N
0.850
TEQG_03955
Trichophyton equinum
TEQG_03955
N
0.837
TERG_05178
Trichophyton rubrum
TERG_05178
N
0.837
TESG_05056
Trichophyton tonsurans
TESG_05056
N
0.708
VDAG_06648
Verticillium dahliae
VDAG_06648
N
0.747