CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CNOT4
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000016181
T38935_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
1.000
e_gw.71.47.1
M233_0.6
Nematostella vectensis
AGAYASA
RNAcompete
Ray et al.(2013)
RNCMPT00278
0.766
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.727
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000021263
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSMMUP00000021264
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSMMUP00000021265
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSMMUP00000021266
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
69 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A7MB01_BOVIN
Bos taurus
ENSBTAG00000031846
I
0.000
Ame_R009455
Ailuropoda melanoleuca
Ame_R009455
I
0.000
ENSPPYG00000004919
Pongo pygmaeus
ENSPPYG00000004919
I
0.000
Q4KU45_HORSE
Equus caballus
ENSECAG00000000314
I
0.000
SART3
Callithrix jacchus
ENSCJAG00000015330
I
0.000
SART3
Oryctolagus cuniculus
ENSOCUG00000016285
I
0.000
SART3
Ochotona princeps
ENSOPRG00000015817
I
0.000
SART3
Procavia capensis
ENSPCAG00000007505
I
0.000
SART3
Pan troglodytes
ENSPTRG00000005404
I
0.000
SART3
Pteropus vampyrus
ENSPVAG00000007442
I
0.000
Sart3
Rattus norvegicus
ENSRNOG00000000702
I
0.000
SART3
Sus scrofa
ENSSSCG00000009946
I
0.000
SART3
Spermophilus tridecemlineatus
ENSSTOG00000002376
I
0.000
SART3
Tupaia belangeri
ENSTBEG00000008888
I
0.000
SART3
Tursiops truncatus
ENSTTRG00000003993
I
0.000
SART3
Ornithorhynchus anatinus
ENSOANG00000008794
I
0.000
Sart3
Mus musculus
ENSMUSG00000018974
I
0.000
SART3
Canis familiaris
ENSCAFG00000011352
I
0.000
SART3
Cavia porcellus
ENSCPOG00000010969
I
0.000
SART3
Erinaceus europaeus
ENSEEUG00000002954
I
0.000
SART3
Echinops telfairi
ENSETEG00000011292
I
0.000
SART3
Felis catus
ENSFCAG00000014041
I
0.000
SART3
Homo sapiens
ENSG00000075856
D
0.000
SART3
Gorilla gorilla
ENSGGOG00000011562
I
0.000
SART3
Loxodonta africana
ENSLAFG00000007167
I
0.000
SART3
Macropus eugenii
ENSMEUG00000006799
I
0.000
SART3
Meleagris gallopavo
ENSMGAG00000005746
I
0.000
SART3
Microcebus murinus
ENSMICG00000013052
I
0.000
SART3
Macaca mulatta
ENSMMUG00000017124
I
0.000
SART3
Monodelphis domestica
ENSMODG00000002859
I
0.000