Rbm39 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000019848 T41128_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000026964 RRM 155 223
ENSRNOP00000026964 RRM 252 322
ENSRNOP00000026964 RRM 445 502
ENSRNOP00000061296 RRM 146 214
ENSRNOP00000061296 RRM 243 269
ENSRNOP00000061296 RRM 266 291

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL005046 Aedes aegypti AAEL005046 N 0.771
AAH75146 Xenopus laevis AAH75146 N 0.955
AAH77813 Xenopus laevis AAH77813 N 0.960
AGAP008433 Anopheles gambiae AGAP008433 N 0.745
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.765
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 1.000
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 1.000
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 1.000
CG11266 Drosophila melanogaster FBgn0031883 N 0.734
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.774
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.774
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.774
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.774
DGIL_AUG5s7518g10t1 Acyrtosiphon pisum DGIL_AUG5s7518g10t1 N 0.745
ENSCPOG00000021775 Cavia porcellus ENSCPOG00000021775 N 0.889
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 1.000
estExt_Genewise1.C_sca_90322 Lottia gigantea estExt_Genewise1.C_sca_90322 N 0.768
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.764
e_gw.57.85.1 Branchiostoma floridae e_gw.57.85.1 N 0.709
fgenesh1_pg.scaffold_245000036 Nematostella vectensis fgenesh1_pg.scaffold_245000036 N 0.700
GA10876-RA Drosophila pseudoobscura FBgn0070932 N 0.729
GD23448 Drosophila simulans FBgn0194830 N 0.734
GE14328 Drosophila yakuba FBgn0231943 N 0.739
GF14957 Drosophila ananassae FBgn0091982 N 0.734
GG10454 Drosophila erecta FBgn0102763 N 0.734
GH13506 Drosophila grimshawi FBgn0120982 N 0.740
GI10246 Drosophila mojavensis FBgn0133011 N 0.725
GJ18017 Drosophila virilis FBgn0205182 N 0.716
GK15272 Drosophila willistoni FBgn0217277 N 0.740
GM16278 Drosophila sechellia FBgn0171194 N 0.734
PHUM394230 Pediculus humanus PHUM394230 N 0.770
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 1.000
RBM23 Oryzias latipes ENSORLG00000009919 N 0.909
RBM23 Oryzias latipes ENSORLG00000010370 N 0.889
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.879
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.869
RBM23 Tetraodon nigroviridis ENSTNIG00000005223 N 0.803
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.889
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.894
RBM23 Tupaia belangeri ENSTBEG00000011543 N 0.893
RBM39 Tarsius syrichta ENSTSYG00000005605 N 1.000
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.965
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.990
RBM39 Tursiops truncatus ENSTTRG00000017039 N 1.000
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.995
RBM39 Loxodonta africana ENSLAFG00000010346 N 1.000
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.975
RBM39 Gallus gallus ENSGALG00000001550 N 0.995
RBM39 Homo sapiens ENSG00000131051 N 1.000
RBM39 Echinops telfairi ENSETEG00000016295 N 0.889
RBM39 Equus caballus ENSECAG00000013423 N 1.000
RBM39 Dasypus novemcinctus ENSDNOG00000025219 N 0.763
RBM39 Cavia porcellus ENSCPOG00000014625 N 0.925
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.990
RBM39 Microcebus murinus ENSMICG00000001668 N 1.000
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.990
RBM39 Tupaia belangeri ENSTBEG00000017320 N 0.859
RBM39 Sus scrofa ENSSSCG00000007309 N 1.000
RBM39 Sorex araneus ENSSARG00000007673 N 1.000
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 1.000
RBM39 Pan troglodytes ENSPTRG00000013449 N 1.000
RBM39 Procavia capensis ENSPCAG00000008764 N 0.889
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.924
Rbm39 Mus musculus ENSMUSG00000027620 N 1.000
RBM39 Canis familiaris ENSCAFG00000008327 N 1.000
rbm39a Danio rerio ENSDARG00000011613 N 0.904
rbm39b Danio rerio ENSDARG00000041853 N 0.899