D3ZXA3_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000038905 T41232_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.864
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.864
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.864
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.843
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000022054 RRM 15 90
ENSRNOP00000022054 RRM 112 181
ENSRNOP00000056225 RRM 15 83
ENSRNOP00000056225 RRM 105 174
ENSRNOP00000061650 RRM 15 83
ENSRNOP00000061650 RRM 105 174

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

285 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH45260 Xenopus laevis AAH45260 I 0.829
AAH72090 Xenopus laevis AAH72090 I 0.829
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.864
CBF67672 Xenopus laevis CBF67672 I 0.829
CBU92546 Xenopus laevis CBU92546 I 0.829
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.814
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.829
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.794
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.871
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.768
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.746
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.734
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.000
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.821
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.762
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.850
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.789
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.724
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.787
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.755
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.000
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.754
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.773
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.776
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.761
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.748
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.787
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.789
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.809
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.713
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.000
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.807
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.801
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.780
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.864
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.836
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.807
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.864
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.787
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.843
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.864
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.821
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.850
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.787
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.864
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.864
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.850
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.850
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.871
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.829
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.851
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.864
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.782
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.850
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.809
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.000
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.703
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.712
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.787
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.754
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.843
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.857
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.864
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.843
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.850
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.857
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.801
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.836
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.850
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.857
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.864
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.850
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.843
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.857
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.000
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.821
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.864
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.821
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.773
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.810
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.829
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.786
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.864
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.864
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.787
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.823
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.864
HNRNPA1 Homo sapiens ENSG00000135486 D 0.864
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.864
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.864
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.864
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.786
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.836
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.843
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.864
LOC100054206 Equus caballus ENSECAG00000006699 I 0.775
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.857
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.864
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.794
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.843
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.843
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.843
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.864
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.857
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.871
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.843
LOC785445 Bos taurus ENSBTAG00000025621 I 0.823
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.864
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.864
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.843
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.864
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.864
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.864
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.864
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.000
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.842
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.821
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.821
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.801
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.000