ENSCJAG00000035202 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000035202 T35731_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.936
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.936
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.936
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.914
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000048494 RRM 16 85
ENSCJAP00000048494 RRM 107 175

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

261 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.922
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.922
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.922
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.922
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.922
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.922
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.922
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.922
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.922
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.922
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.922
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.922
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.922
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.922
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.922
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.922
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.922
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.922
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.922
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.922
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.922
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.922
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.922
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.922
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.922
HNRNPA1 Homo sapiens ENSG00000135486 D 0.922
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.922
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.915
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.915
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.915
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.915
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.915
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.915
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.915
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.915
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.915
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.915
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.915
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.915
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.908
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.908
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.908
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.908
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.908
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.907
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.901
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.901
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.901
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.901
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.901
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.901
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.900
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.894
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.894
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.894
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.894
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.894
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.894
LOC785445 Bos taurus ENSBTAG00000025621 I 0.893
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.893
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.887
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.887
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.887
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.887
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.880
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.880
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.879
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.879
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.879
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.879
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.879
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.879
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.872
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.872
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.872
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.871
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.871
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.871
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.871
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.866
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.865
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.864
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.864
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.864
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.864
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.864
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.864
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.859
LOC100054206 Equus caballus ENSECAG00000006699 I 0.859
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.857
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.857
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.857
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.857
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.852
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.851
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.851
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.850
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.850
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.850
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.850
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.850
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.850
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.846
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.845
CBU92546 Xenopus laevis CBU92546 I 0.844
AAH45260 Xenopus laevis AAH45260 I 0.844
CBF67672 Xenopus laevis CBF67672 I 0.844
AAH72090 Xenopus laevis AAH72090 I 0.844
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.839
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.838
AAA49742 Xenopus laevis AAA49742 I 0.837
CBU92428 Xenopus laevis CBU92428 I 0.837
P17130 Xenopus laevis P17130 I 0.837
AAA49741 Xenopus laevis AAA49741 I 0.837
CBF67555 Xenopus laevis CBF67555 I 0.837
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.836
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.836
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.836
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.836
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.831
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.831
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.830
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.829
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.829
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.829
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.825
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.824
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.824
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.824
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.821
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.817
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.817
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.816
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.814
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.814
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.814
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.814
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.810
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.810
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.810
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.804
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.803
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.801
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.801
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.801
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.800
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.800
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.796
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.796
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.796
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.796
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.796
HNRNPA3 Homo sapiens ENSG00000170144 I 0.796
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.796
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.796
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.796
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.796
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.796
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.796
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.796
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.796
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.796
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.796
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.796
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.796
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.796
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.796
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.796
LOC781499 Bos taurus ENSBTAG00000021580 I 0.796
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.794
P51968 Xenopus laevis P51968 I 0.794
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.794
AAA49949 Xenopus laevis AAA49949 I 0.794
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.794
Gm8991 Mus musculus ENSMUSG00000059179 I 0.794
LOC100066794 Equus caballus ENSECAG00000023237 I 0.794
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.794
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.787
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.787
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.785
CBU92451 Xenopus laevis CBU92451 I 0.783
AAA49950 Xenopus laevis AAA49950 I 0.783
AAI69881 Xenopus laevis AAI69881 I 0.783
CBF67578 Xenopus laevis CBF67578 I 0.783
P51992 Xenopus laevis P51992 I 0.783
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.782
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.778
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.776
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.773
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.773
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.773
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.772
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.772
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.769
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.767
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.766
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.764
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.761
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.760
zgc:66127 Danio rerio ENSDARG00000011020 I 0.759
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.757
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.755
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.754
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.754
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.752
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.752
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.750
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.748
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.748
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.745
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.745
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.745
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.745
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.745
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.745
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.745
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.743
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.743
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.741
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.740
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.738
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.738
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.738
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.738
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.734
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.734
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.731
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.731
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.731
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.730
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.730
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.730
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.726
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.725
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.725
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.724
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.724
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.723
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.722
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.721
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.717
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.716
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.716
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.716
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.715
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.713
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.712
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.712
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.711
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.711
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.711
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.710
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.709
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.708
D3ZQR9_RAT Rattus norvegicus ENSRNOG00000027605 I 0.708
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.707
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.706
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.703
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.703
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.701
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.701