XP_541811.1 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000006586 T35044_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.908
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.908
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.908
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.887
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.745
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000034559 RRM 16 85
ENSCAFP00000034559 RRM 107 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

253 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.908
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.908
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.908
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.908
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.908
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.908
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.908
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.908
HNRNPA1 Homo sapiens ENSG00000135486 D 0.908
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.908
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.908
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.908
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.908
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.908
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.908
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.908
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.908
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.908
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.908
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.908
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.908
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.908
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.908
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.908
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.908
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.908
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.908
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.908
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.908
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.901
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.901
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.901
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.901
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.901
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.901
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.901
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.894
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.894
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.894
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.894
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.894
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.894
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.894
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.893
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.893
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.887
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.887
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.887
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.887
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.887
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.887
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.887
LOC785445 Bos taurus ENSBTAG00000025621 I 0.886
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.879
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.879
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.879
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.879
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.879
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.879
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.879
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.873
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.872
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.872
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.871
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.866
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.865
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.865
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.865
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.865
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.864
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.864
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.864
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.864
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.864
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.858
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.858
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.858
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.858
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.857
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.857
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.857
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.857
AAH72090 Xenopus laevis AAH72090 I 0.851
CBU92546 Xenopus laevis CBU92546 I 0.851
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.851
AAH45260 Xenopus laevis AAH45260 I 0.851
CBF67672 Xenopus laevis CBF67672 I 0.851
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.850
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.850
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.850
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.850
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.845
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.844
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.844
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.843
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.843
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.843
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.843
LOC100054206 Equus caballus ENSECAG00000006699 I 0.838
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.837
P17130 Xenopus laevis P17130 I 0.837
AAA49742 Xenopus laevis AAA49742 I 0.837
CBF67555 Xenopus laevis CBF67555 I 0.837
CBU92428 Xenopus laevis CBU92428 I 0.837
AAA49741 Xenopus laevis AAA49741 I 0.837
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.836
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.836
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.831
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.831
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.829
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.829
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.829
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.829
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.829
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.825
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.824
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.823
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.823
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.821
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.821
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.818
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.817
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.817
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.817
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.816
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.816
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.816
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.814
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.814
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.814
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.811
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.810
LOC781499 Bos taurus ENSBTAG00000021580 I 0.810
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.810
HNRNPA3 Homo sapiens ENSG00000170144 I 0.810
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.810
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.810
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.810
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.810
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.810
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.810
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.810
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.810
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.810
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.810
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.810
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.810
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.810
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.810
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.810
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.810
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.809
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.809
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.809
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.809
Gm8991 Mus musculus ENSMUSG00000059179 I 0.809
LOC100066794 Equus caballus ENSECAG00000023237 I 0.809
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.803
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.803
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.803
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.803
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.801
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.801
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.800
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.797
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.796
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.796
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.796
AAA49949 Xenopus laevis AAA49949 I 0.794
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.794
P51968 Xenopus laevis P51968 I 0.794
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.793
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.793
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.789
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.789
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.788
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.787
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.787
CBF67578 Xenopus laevis CBF67578 I 0.783
AAA49950 Xenopus laevis AAA49950 I 0.783
AAI69881 Xenopus laevis AAI69881 I 0.783
P51992 Xenopus laevis P51992 I 0.783
CBU92451 Xenopus laevis CBU92451 I 0.783
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.782
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.782
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.780
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.779
zgc:66127 Danio rerio ENSDARG00000011020 I 0.773
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.769
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.769
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.769
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.768
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.768
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.766
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.764
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.761
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.759
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.759
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.757
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.753
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.752
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.752
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.750
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.750
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.748
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.748
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.746
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.745
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.745
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.741
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.739
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.739
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.739
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.739
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.738
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.738
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.738
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.738
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.736
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.734
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.733
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.733
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.731
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.731
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.730
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.730
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.730
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.728
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.728
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.727
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.726
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.726
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.725
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.724
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.724
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.723
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.723
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.723
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.721
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.720
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.718
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.718
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.717
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.717
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.714
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.712
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.710
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.710
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.704
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.704
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.703
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.703
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.701