GM10617 (Drosophila sechellia)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0165563 T43785_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		1.000
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.704
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0192094 RRM 45 115

Links

Other RRM family RBPs
Other Drosophila sechellia RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL010642 Aedes aegypti AAEL010642 I 0.887
AGAP010200 Anopheles gambiae AGAP010200 I 0.873
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.789
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.704
BGIBMGA005213 Bombyx mori BGIBMGA005213 I 0.803
CG2931 Drosophila melanogaster FBgn0037342 D 1.000
CPIJ005997 Culex quinquefasciatus CPIJ005997 I 0.746
CpipJ_CPIJ005997 Culex pipiens CpipJ_CPIJ005997 I 0.746
DGIL_AUG5s15230g22t1 Acyrtosiphon pisum DGIL_AUG5s15230g22t1 I 0.746
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.704
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.704
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.704
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.704
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.704
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.718
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.746
GA15528-RA Drosophila pseudoobscura FBgn0075545 I 0.986
GD19605 Drosophila simulans FBgn0191097 I 0.986
GE24162 Drosophila yakuba FBgn0241294 I 1.000
GF11626 Drosophila ananassae FBgn0088666 I 1.000
GG10948 Drosophila erecta FBgn0103251 I 0.986
GH22277 Drosophila grimshawi FBgn0129737 I 0.986
GI23084 Drosophila mojavensis FBgn0145811 I 0.986
GJ22705 Drosophila virilis FBgn0209809 I 0.986
GK12952 Drosophila willistoni FBgn0214961 I 0.986
GL22151 Drosophila persimilis FBgn0159743 I 0.986
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.704
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.708
LOC100051102 Equus caballus ENSECAG00000018215 I 0.704
MDP0000283678 Malus x domestica MDP0000283678 I 0.704
MDP0000320908 Malus x domestica MDP0000320908 I 0.704
Minc13155 Meloidogyne incognita Minc13155 I 0.746
PHUM106890 Pediculus humanus PHUM106890 I 0.803
ppa010477m Prunus persica ppa010477m I 0.704
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.704
RBM42 Canis familiaris ENSCAFG00000006925 I 0.704
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.704
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.704
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.704
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.704
RBM42 Microcebus murinus ENSMICG00000009880 I 0.704
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.704
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.704
RBM42 Homo sapiens ENSG00000126254 D 0.704
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.704
rbm42 Danio rerio ENSDARG00000039910 I 0.718
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.704
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.704
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.704
Rbm42 Mus musculus ENSMUSG00000036733 I 0.704
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.704
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.704
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.704
RBM42 Sus scrofa ENSSSCG00000002905 I 0.704
RBM42 Sorex araneus ENSSARG00000010724 I 0.704
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.704
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.704
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.704
RBM42 Procavia capensis ENSPCAG00000013053 I 0.704
RBM42 Oryzias latipes ENSORLG00000003387 I 0.704
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.704
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.704