LOC_Os01g16090 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os01g16090 T44922_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g16090.1 RRM 158 227
LOC_Os01g16090.1 RRM 269 338

Links

Other RRM family RBPs
Other Oryza sativa RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30006.m000276 Ricinus communis 30006.m000276 N 0.729
30099.m001684 Ricinus communis 30099.m001684 N 0.750
AT2G41060 Arabidopsis thaliana AT2G41060-TAIR-G N 0.721
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.750
B9IHG4_POPTR Populus trichocarpa POPTR_0016s02440 N 0.721
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 1.000
BRADI2G09820 Brachypodium distachyon BRADI2G09820 N 0.871
cassava22353.valid.m1 Manihot esculenta cassava22353.valid.m1 N 0.750
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 0.750
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 0.750
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.729
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.729
cassava6906.valid.m1 Manihot esculenta cassava6906.valid.m1 N 0.714
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.729
chr2.CM0031.350.nc Lotus japonicus chr2.CM0031.350.nc N 0.700
Cucsa.250370 Cucumis sativus Cucsa.250370 N 0.729
Glyma02g44330.1 Glycine max Glyma02g44330.1 N 0.721
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.721
Glyma14g04480.1 Glycine max Glyma14g04480.1 N 0.721
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.721
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.850
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.721
MDP0000218409 Malus x domestica MDP0000218409 N 0.714
MDP0000381936 Malus x domestica MDP0000381936 N 0.700
MDP0000792725 Malus x domestica MDP0000792725 N 0.700
MDP0000905699 Malus x domestica MDP0000905699 N 0.714
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.736
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.721
mgf002509m Mimulus guttatus mgf002509m N 0.700
mgf005672m Mimulus guttatus mgf005672m N 0.700
mgf012484m Mimulus guttatus mgf012484m N 0.700
PK11606.1 Cannabis sativa PK11606.1 N 0.721
PK27017.1 Cannabis sativa PK27017.1 N 0.714
ppa004648m Prunus persica ppa004648m N 0.714
SB03G010380 Sorghum bicolor Sb03g010380 N 0.857
UBA2A Arabidopsis thaliana AT3G56860-TAIR-G N 0.714
XM_002878068.1 Arabidopsis lyrata fgenesh2_kg.5__2117__AT3G56860.3 N 0.714
XM_002879859.1 Arabidopsis lyrata scaffold_402914.1 N 0.743