cassava22353.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava22353.valid.m1 T49183_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava22353.valid.m1 RRM 183 251
cassava22353.valid.m1 RRM 279 348

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30006.m000276 Ricinus communis 30006.m000276 N 0.777
30099.m001684 Ricinus communis 30099.m001684 N 0.784
AT2G41060 Arabidopsis thaliana AT2G41060-TAIR-G N 0.770
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.763
B9IHG4_POPTR Populus trichocarpa POPTR_0016s02440 N 0.777
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 0.750
BRADI2G09820 Brachypodium distachyon BRADI2G09820 N 0.721
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 1.000
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 1.000
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.971
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.971
cassava6906.valid.m1 Manihot esculenta cassava6906.valid.m1 N 0.741
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.770
chr2.CM0031.350.nc Lotus japonicus chr2.CM0031.350.nc N 0.793
Cucsa.250370 Cucumis sativus Cucsa.250370 N 0.784
Glyma02g44330.1 Glycine max Glyma02g44330.1 N 0.843
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.770
Glyma14g04480.1 Glycine max Glyma14g04480.1 N 0.829
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.784
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.770
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.856
LOC_Os01g16090 Oryza sativa LOC_Os01g16090 N 0.750
MDP0000218409 Malus x domestica MDP0000218409 N 0.777
MDP0000381936 Malus x domestica MDP0000381936 N 0.763
MDP0000792725 Malus x domestica MDP0000792725 N 0.763
MDP0000905699 Malus x domestica MDP0000905699 N 0.777
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.793
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.755
mgf002509m Mimulus guttatus mgf002509m N 0.748
mgf005672m Mimulus guttatus mgf005672m N 0.748
mgf012484m Mimulus guttatus mgf012484m N 0.748
mgf019210m Mimulus guttatus mgf019210m N 0.741
PK11606.1 Cannabis sativa PK11606.1 N 0.814
PK27017.1 Cannabis sativa PK27017.1 N 0.784
ppa004648m Prunus persica ppa004648m N 0.784
SB03G010380 Sorghum bicolor Sb03g010380 N 0.755
UBA2A Arabidopsis thaliana AT3G56860-TAIR-G N 0.763
XM_002878068.1 Arabidopsis lyrata fgenesh2_kg.5__2117__AT3G56860.3 N 0.763
XM_002879859.1 Arabidopsis lyrata scaffold_402914.1 N 0.770