e_gw1.77.52.1 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.77.52.1 T50115_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.77.52.1 RRM 92 161

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29585.m000588 Ricinus communis 29585.m000588 N 0.714
29876.m000260 Ricinus communis 29876.m000260 N 0.871
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.857
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.757
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.814
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.786
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.800
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.857
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.857
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.786
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.729
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.771
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.700
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.857
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.857
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.886
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.886
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.814
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.814
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.843
ENSORLG00000001620 Oryzias latipes ENSORLG00000001620 N 0.700
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.929
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.800
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.957
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.914
fgeneshTA2_pg.C_scaffold_2000899 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000899 N 0.700
Glyma02g10380.1 Glycine max Glyma02g10380.1 N 0.700
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.829
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.857
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.829
GRMZM2G019251 Zea mays GRMZM2G019251 N 0.729
GRMZM2G140352 Zea mays GRMZM2G140352 N 0.714
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.843
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.829
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.743
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.800
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.871
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.786
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.743
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.786
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.729
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.857
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.886
MDP0000119945 Malus x domestica MDP0000119945 N 0.829
MDP0000153894 Malus x domestica MDP0000153894 N 0.829
MDP0000251188 Malus x domestica MDP0000251188 N 0.829
MDP0000320467 Malus x domestica MDP0000320467 N 0.729
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.857
mgf010207m Mimulus guttatus mgf010207m N 0.857
mgf013964m Mimulus guttatus mgf013964m N 0.714
ppa010358m Prunus persica ppa010358m N 0.857
SB01G039330 Sorghum bicolor Sb01g039330 N 0.843
SB02G007020 Sorghum bicolor Sb02g007020 N 0.729
SB07G020860 Sorghum bicolor Sb07g020860 N 0.743
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.757
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.857
XP_002155396.1 Hydra magnipapillata XP_002155396.1 N 0.700