CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM24938
(
Drosophila sechellia
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0179800
T17095_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0206415
CSD
183
248
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKI
FBpp0206415
CSD
271
334
SANNVLNSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRL
FBpp0206415
CSD
342
410
KYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNITR
FBpp0206415
CSD
514
581
REQGTIASLKEGFGFLRCVERQARLFFHFTEVLDTSREIDINDEVEFTVIQEPGLAYNNSRLQAIRIK
FBpp0206415
CSD
760
821
VYRGFIAVMKENFGFIETLSHDEEVFFHFSNYMGNPNWLELGQEVEYTLARNGNTSVSGNCL
FBpp0206415
CSD
919
985
KKRATVDSIKGQFGFLNFEVEDGKKLFFHMSEVQGNTVALHPGDTVEFSVVTNQRNGKSSACNVLKI
Links
Other
CSD
family RBPs
Other
Drosophila sechellia
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI1G04120
Brachypodium distachyon
BRADI1G04120
N
0.000
BRADI1G53760
Brachypodium distachyon
BRADI1G53760
N
0.000
PK01720.1
Cannabis sativa
PK01720.1
N
0.000
Glyma12g28690.1
Glycine max
Glyma12g28690.1
N
0.000
chr6.LjT09E22.140.nd
Lotus japonicus
chr6.LjT09E22.140.nd
N
0.000
LjSGA_139736.1.1
Lotus japonicus
LjSGA_139736.1.1
N
0.000
MDP0000077749
Malus x domestica
MDP0000077749
N
0.000
MDP0000077753
Malus x domestica
MDP0000077753
N
0.000
MDP0000268130
Malus x domestica
MDP0000268130
N
0.000
cassava15324.m1
Manihot esculenta
cassava15324.m1
N
0.000
cassava13904.valid.m1
Manihot esculenta
cassava13904.valid.m1
N
0.000
cassava13309.valid.m1
Manihot esculenta
cassava13309.valid.m1
N
0.000
cassava13308.valid.m1
Manihot esculenta
cassava13308.valid.m1
N
0.000
Medtr2g005410
Medicago truncatula
Medtr2g005410
N
0.000
BGIOSIBCE019075
Oryza indica
BGIOSIBCE019075
N
0.000
BGIOSIBCE024206
Oryza indica
BGIOSIBCE024206
N
0.000
LOC_Os07g12490
Oryza sativa
LOC_Os07g12490
N
0.000
LOC_Os05g34670
Oryza sativa
LOC_Os05g34670
N
0.000
PDK_20s1559651g001
Phoenix dactylifera
PDK_20s1559651g001
N
0.000
estExt_gwp_gw1.C_680211
Physcomitrella patens
estExt_gwp_gw1.C_680211
N
0.000
B9N0F3_POPTR
Populus trichocarpa
POPTR_0004s23460
N
0.000
A9PGC0_POPTR
Populus trichocarpa
POPTR_0011s17110
N
0.000
A9PGS1_POPTR
Populus trichocarpa
POPTR_0022s00450
N
0.000
ppa009432m
Prunus persica
ppa009432m
N
0.000
29765.m000727
Ricinus communis
29765.m000727
N
0.000
28128.m000156
Ricinus communis
28128.m000156
N
0.000
SB09G020640
Sorghum bicolor
Sb09g020640
N
0.000
GSVIVG00023231001
Vitis vinifera
GSVIVG00023231001
N
0.000
GRMZM2G125531
Zea mays
GRMZM2G125531
N
0.000
GRMZM2G472052
Zea mays
GRMZM2G472052
N
0.000