146547 (Helobdella robusta)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 146547 T17222_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.732
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.732
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.708
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.708
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.708
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
146547 CSD 2 72

Links

Other CSD family RBPs
Other Helobdella robusta RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.704
AAEL001375 Aedes aegypti AAEL001375 I 0.000
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.718
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.000
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.000
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.000
AGAP006108 Anopheles gambiae AGAP006108 I 0.000
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.704
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.704
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.718
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.736
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.708
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.722
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.722
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.736
Bm1_57515 Brugia malayi Bm1_57515 I 0.775
CBN16711 Caenorhabditis brenneri CBN16711 I 0.732
CBG02981 Caenorhabditis briggsae CBG02981 I 0.718
cey-1 Caenorhabditis elegans F33A8.3 I 0.732
CJA05984 Caenorhabditis japonica CJA05984 I 0.718
CRE01789 Caenorhabditis remanei CRE01789 I 0.732
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.000
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.000
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.722
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.000
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.000
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.000
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.000
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.000
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.000
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.750
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.708
ENSCJAG00000009207 Callithrix jacchus ENSCJAG00000009207 I 0.000
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.000
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.722
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.000
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.000
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.000
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.722
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.722
YBX2 Canis familiaris ENSCAFG00000016128 I 0.736
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.732
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.732
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.000
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.708
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.000
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.000
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.000
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.000
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.000
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.746
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.000
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.000
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.000
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.000
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.000
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.000
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.736
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.722
CSDA Cavia porcellus ENSCPOG00000011329 I 0.722
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.722
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.000
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.000
ybx1 Danio rerio ENSDARG00000004757 I 0.722
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.732
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.000
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.000
Csda Dipodomys ordii ENSDORG00000009103 I 0.722
GF10852 Drosophila ananassae FBgn0087892 I 0.718
GH16919 Drosophila grimshawi FBgn0124390 I 0.718
yps Drosophila melanogaster FBgn0022959 I 0.704
GI13673 Drosophila mojavensis FBgn0136428 I 0.718
GL15684 Drosophila persimilis FBgn0153288 I 0.718
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.718
GM24682 Drosophila sechellia FBgn0179545 I 0.704
GD12750 Drosophila simulans FBgn0184477 I 0.704
GJ14010 Drosophila virilis FBgn0201228 I 0.718
GK16710 Drosophila willistoni FBgn0218712 I 0.718
GE20150 Drosophila yakuba FBgn0237472 I 0.704
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.000
CSDA Echinops telfairi ENSETEG00000002557 I 0.722
YBX2 Echinops telfairi ENSETEG00000014271 I 0.000
YBX1 Echinops telfairi ENSETEG00000014789 I 0.000
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.722
LOC100067336 Equus caballus ENSECAG00000023592 I 0.722
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.708
LOC100072964 Equus caballus ENSECAG00000009996 I 0.736
LOC100065107 Equus caballus ENSECAG00000013777 I 0.722
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.722
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.000
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.722
CSDA Felis catus ENSFCAG00000018959 I 0.000
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.722
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.722
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.722
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.000
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.722
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.708
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.000
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.722
133388 Helobdella robusta 133388 I 0.831
YB-1 Homo sapiens ENSG00000065978 D 0.722
CSDA Homo sapiens ENSG00000060138 I 0.722
YBX2 Homo sapiens ENSG00000006047 D 0.722
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.704
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.704
ISCW005281 Ixodes scapularis ISCW005281 I 0.761
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.761
CSDA Loxodonta africana ENSLAFG00000017247 I 0.722
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.736
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.722
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.708
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.722
CSDA Macaca mulatta ENSMMUG00000022469 I 0.722
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.750
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.000
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.722
Minc12652 Meloidogyne incognita Minc12652 I 0.000
YBX1 Microcebus murinus ENSMICG00000014984 I 0.722
CSDA Microcebus murinus ENSMICG00000004602 I 0.000
CSDA Monodelphis domestica ENSMODG00000018248 I 0.722
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.736
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.722
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.722
Csda Mus musculus ENSMUSG00000030189 I 0.722
Ybx1 Mus musculus ENSMUSG00000028639 I 0.722
Ybx2 Mus musculus ENSMUSG00000018554 I 0.736
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.722
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.000
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.718
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.000
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.732
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.000
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.736
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.704
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.722
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.722
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.000
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.000
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.000
YBX2 Oryzias latipes ENSORLG00000018683 I 0.000
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.000
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.722
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.000
CSDA Pan troglodytes ENSPTRG00000004681 I 0.722
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.722
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.722
PHUM156720 Pediculus humanus PHUM156720 I 0.718
PHUM156710 Pediculus humanus PHUM156710 I 0.732
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.722
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.000
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.746
YBX1 Procavia capensis ENSPCAG00000008397 I 0.000
YBX2 Procavia capensis ENSPCAG00000008019 I 0.736
CSDA Procavia capensis ENSPCAG00000001397 I 0.000
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.722
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.722
Csda Rattus norvegicus ENSRNOG00000005480 I 0.722
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.708
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.000
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.000
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.000
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.722
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.000
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.708
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.000
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.736
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.000
YBX1 Sorex araneus ENSSARG00000012628 I 0.000
YBX2 Sorex araneus ENSSARG00000000488 I 0.722
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.722
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.732
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.732
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.000
YBX2 Sus scrofa ENSSSCG00000017938 I 0.736
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.000
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.000
CSDA Sus scrofa ENSSSCG00000000633 I 0.722
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.722
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.722
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.708
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.722
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.000
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.708
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.722
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.704
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.000
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.722
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.736
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.000
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.000
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.000
CSDA Vicugna pacos ENSVPAG00000000876 I 0.000
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.722
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.775
AAI55915 Xenopus laevis AAI55915 I 0.722
AAI69704 Xenopus laevis AAI69704 I 0.722
ybx2-a Xenopus laevis AAI69706 D 0.722
CAA42778 Xenopus laevis CAA42778 I 0.722
P21573 Xenopus laevis P21573 I 0.722
P45441 Xenopus laevis P45441 I 0.708
P21574 Xenopus laevis P21574 I 0.722
AAI55914 Xenopus laevis AAI55914 I 0.708
AAI30161 Xenopus laevis AAI30161 I 0.722
AAI06324 Xenopus laevis AAI06324 I 0.722
AAH42217 Xenopus laevis AAH42217 I 0.722
AAH41191 Xenopus laevis AAH41191 I 0.722
AAA49924 Xenopus laevis AAA49924 I 0.708
AAA49716 Xenopus laevis AAA49716 I 0.722
AAA49715 Xenopus laevis AAA49715 I 0.722
Q00436 Xenopus laevis Q00436 I 0.722
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.722
csda Xenopus tropicalis ENSXETG00000016239 I 0.722