CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP2
(
Erinaceus europaeus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSEEUG00000001077
T18721_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000000964
KH
15
75
TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI
ENSEEUP00000000964
KH
99
162
TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI
Links
Other
KH
family RBPs
Other
Erinaceus europaeus
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002874427.1
Arabidopsis lyrata
fgenesh2_kg.6__2815__AT5G30510.1
N
0.000
RPS1
Arabidopsis thaliana
AT5G30510-TAIR-G
N
0.000
BRADI1G64130
Brachypodium distachyon
BRADI1G64130
N
0.000
PK19934.1
Cannabis sativa
PK19934.1
N
0.000
Cucsa.252380
Cucumis sativus
Cucsa.252380
N
0.000
Glyma17g04190.1
Glycine max
Glyma17g04190.1
N
0.000
Glyma15g14550.1
Glycine max
Glyma15g14550.1
N
0.000
Glyma09g03660.1
Glycine max
Glyma09g03660.1
N
0.000
MDP0000926379
Malus x domestica
MDP0000926379
N
0.000
MDP0000158987
Malus x domestica
MDP0000158987
N
0.000
cassava42994.valid.m1
Manihot esculenta
cassava42994.valid.m1
N
0.000
Medtr2g037310
Medicago truncatula
Medtr2g037310
N
0.000
mgf010973m
Mimulus guttatus
mgf010973m
N
0.000
mgf005405m
Mimulus guttatus
mgf005405m
N
0.000
BGIOSIBCE010878
Oryza indica
BGIOSIBCE010878
N
0.000
LOC_Os03g20100
Oryza sativa
LOC_Os03g20100
N
0.000
B9HX66_POPTR
Populus trichocarpa
POPTR_0010s16010
N
0.000
A9PE95_POPTR
Populus trichocarpa
POPTR_0008s10050
N
0.000
ppa006438m
Prunus persica
ppa006438m
N
0.000
29889.m003354
Ricinus communis
29889.m003354
N
0.000
SB01G037100
Sorghum bicolor
Sb01g037100
N
0.000