PCBP4 (Takifugu rubripes)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTRUG00000007426 T19640_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.783
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.751
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.751
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.746
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000018354 KH 26 86
ENSTRUP00000018354 KH 110 173
ENSTRUP00000018354 KH 300 362
ENSTRUP00000018355 KH 18 78
ENSTRUP00000018355 KH 102 165
ENSTRUP00000018355 KH 244 306
ENSTRUP00000018356 KH 15 75
ENSTRUP00000018356 KH 99 162
ENSTRUP00000018356 KH 286 348
ENSTRUP00000018357 KH 15 75
ENSTRUP00000018357 KH 99 162
ENSTRUP00000018357 KH 285 347
ENSTRUP00000018358 KH 15 75
ENSTRUP00000018358 KH 99 162
ENSTRUP00000018359 KH 13 73
ENSTRUP00000018359 KH 97 160
ENSTRUP00000018359 KH 268 330
ENSTRUP00000018360 KH 6 66
ENSTRUP00000018360 KH 90 153
ENSTRUP00000018360 KH 256 318
ENSTRUP00000018361 KH 13 76
ENSTRUP00000018361 KH 180 242

Links

Other KH family RBPs
Other Takifugu rubripes RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.989
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.989
PCBP4 Danio rerio ENSDARG00000024276 N 0.928
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.824
PCBP3 Canis familiaris ENSCAFG00000011907 N 0.824
PCBP3 Ornithorhynchus anatinus ENSOANG00000006265 N 0.824
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.824
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.824
AAH74333 Xenopus laevis AAH74333 N 0.824
Pcbp3 Dipodomys ordii ENSDORG00000003640 N 0.824
AAI33216 Xenopus laevis AAI33216 N 0.816
PCBP4 Homo sapiens ENSG00000090097 I 0.816
pcbp3 Danio rerio ENSDARG00000054378 I 0.808
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.804
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.800
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.788
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.788
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.788
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.784
zgc:110045 Danio rerio ENSDARG00000057141 N 0.784
LOC100050101 Equus caballus ENSECAG00000012413 I 0.783
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.783
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.783
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.783
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.783
PCBP3 Gallus gallus ENSGALG00000013155 I 0.783
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.783
PCBP3 Homo sapiens ENSG00000183570 I 0.783
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.783
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.783
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.783
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.783
pcbp2 Xenopus tropicalis ENSXETG00000010491 N 0.780
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.780
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.778
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.778
LOC100060660 Equus caballus ENSECAG00000024218 I 0.778
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.778
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.778
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.778
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.778
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.778
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.778
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.778
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.778
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.778
LOC426023 Gallus gallus ENSGALG00000013313 N 0.776
PCBP2 Erinaceus europaeus ENSEEUG00000001077 N 0.776
PCBP2 Vicugna pacos ENSVPAG00000000406 N 0.776
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.772
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.772
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.772
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.767
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.767
PCBP2 Sorex araneus ENSSARG00000000999 N 0.764
CAD13196 Xenopus laevis CAD13196 N 0.764
PCBP2 Choloepus hoffmanni ENSCHOG00000012759 N 0.764
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.762
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.762
ENSPPYG00000011525 Pongo pygmaeus ENSPPYG00000011525 N 0.760
AAH84195 Xenopus laevis AAH84195 I 0.751
AAH41241 Xenopus laevis AAH41241 I 0.751
pcbp2 Danio rerio ENSDARG00000013184 D 0.751
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.751
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.751
CAB50743 Xenopus laevis CAB50743 I 0.751
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.751
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.751
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.751
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.751
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.751
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.751
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.751
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.751
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.751
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.751
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.751
CAD29864 Xenopus laevis CAD29864 I 0.751
PCBP3 Gallus gallus ENSGALG00000004394 I 0.751
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.751
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.751
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.751
PCBP2 Homo sapiens ENSG00000197111 D 0.751
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.751
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.751
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.751
PCBP2 Equus caballus ENSECAG00000022389 I 0.751
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.751
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.751
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.746
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.746
PCBP1 Homo sapiens ENSG00000169564 D 0.746
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.746
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.746
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.746
LOC100050579 Equus caballus ENSECAG00000002544 I 0.746
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.746
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.746
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.746
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.746
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.746
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.746
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.746
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.746
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.746
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.742
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.741
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.741
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.741
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.741
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.735
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.735
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.735
PCBP4 Monodelphis domestica ENSMODG00000011790 I 0.735
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.734
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.730
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.730
ENSTNIG00000003546 Tetraodon nigroviridis ENSTNIG00000003546 N 0.728
ENSMGAG00000003191 Meleagris gallopavo ENSMGAG00000003191 N 0.720
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.720
ENSMGAG00000005091 Meleagris gallopavo ENSMGAG00000005091 N 0.712
PHUM522820 Pediculus humanus PHUM522820 N 0.712
pcbp1 Xenopus tropicalis ENSXETG00000011483 N 0.712
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.709
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.707
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.707
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.704