FMR1 (Homo sapiens)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSG00000102081 T18787_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FMR1
M016_0.6		 Homo sapiens KGACARG RNAcompete
Ray et al.(2013)
RNCMPT00016 		(Direct)
FMR1
M304_0.6		 Homo sapiens Sequence logo not available GGGCKAAGGARK SELEX
Cook et al.(2011)
471_15805463 		(Direct)
FMR1
M305_0.6		 Homo sapiens Sequence logo not available KAGCGRCUGG SELEX
Cook et al.(2011)
471_15805463.1 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M016_0.6 KH 51 110
M016_0.6 KH 114 227

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000218200 KH 220 279
ENSP00000218200 KH 283 396
ENSP00000355115 KH 220 279
ENSP00000359501 KH 220 279
ENSP00000359501 KH 283 336
ENSP00000359502 KH 220 279
ENSP00000359502 KH 283 336
ENSP00000359506 KH 220 279
ENSP00000359506 KH 283 336
ENSP00000359508 KH 220 279
ENSP00000359508 KH 283 396
ENSP00000395923 KH 220 279
ENSP00000395923 KH 283 394
ENSP00000413764 KH 220 279
ENSP00000413764 KH 283 336

Links

Other KH family RBPs
Other Homo sapiens RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R006793 Ailuropoda melanoleuca Ame_R006793 I 0.813
FMR1 Anolis carolinensis ENSACAG00000007899 N 0.860
Q0II33_BOVIN Bos taurus ENSBTAG00000012552 N 0.966
LOC100414871 Callithrix jacchus ENSCJAG00000003925 I 1.000
FMR1 Canis familiaris ENSCAFG00000019085 I 0.974
FMR1 Cavia porcellus ENSCPOG00000003723 N 0.966
FMR1 Choloepus hoffmanni ENSCHOG00000006340 N 1.000
FXR1 Choloepus hoffmanni ENSCHOG00000012877 N 0.700
FMR1 Dasypus novemcinctus ENSDNOG00000019486 I 0.755
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.752
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.752
Fmr1 Dipodomys ordii ENSDORG00000012501 N 0.965
FMR1 Echinops telfairi ENSETEG00000006061 I 0.848
FMR1 Erinaceus europaeus ENSEEUG00000015366 N 1.000
FMR1 Felis catus ENSFCAG00000007228 I 0.825
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.770
FMR1 Gorilla gorilla ENSGGOG00000010373 N 1.000
FMR1 Loxodonta africana ENSLAFG00000013592 N 0.974
FMR1 Macaca mulatta ENSMMUG00000015814 I 1.000
FXR1 Macropus eugenii ENSMEUG00000004706 N 0.867
FMR1 Macropus eugenii ENSMEUG00000014280 N 0.967
FMR1 Meleagris gallopavo ENSMGAG00000008270 N 0.860
FMR1 Monodelphis domestica ENSMODG00000005550 I 0.747
Fmr1 Mus musculus ENSMUSG00000000838 I 0.974
FMR1 Myotis lucifugus ENSMLUG00000000587 N 1.000
FMR1 Ochotona princeps ENSOPRG00000012759 N 0.965
FXR2 Ornithorhynchus anatinus ENSOANG00000005646 N 0.750
FMR1 Ornithorhynchus anatinus ENSOANG00000001097 I 0.947
FMR1 Oryctolagus cuniculus ENSOCUG00000014621 N 0.982
FXR2 Otolemur garnettii ENSOGAG00000008146 N 0.767
FMR1 Otolemur garnettii ENSOGAG00000013061 N 0.877
FMR1 Pan troglodytes ENSPTRG00000022349 I 1.000
ENSPPYG00000020797 Pongo pygmaeus ENSPPYG00000020797 I 0.994
FMR1 Procavia capensis ENSPCAG00000011936 N 0.957
FMR1 Pteropus vampyrus ENSPVAG00000013386 I 0.820
FMR1_RAT Rattus norvegicus ENSRNOG00000011900 I 0.948
FMR1 Sorex araneus ENSSARG00000003475 N 0.939
FMR1 Spermophilus tridecemlineatus ENSSTOG00000003260 N 0.974
FMR1 Sus scrofa ENSSSCG00000012727 I 0.826
FMR1 Taeniopygia guttata ENSTGUG00000004735 I 0.747
FMR1 Takifugu rubripes ENSTRUG00000005362 N 0.724
FMR1 Tarsius syrichta ENSTSYG00000014392 N 1.000
FXR1 Tupaia belangeri ENSTBEG00000007370 N 0.850
FMR1 Tursiops truncatus ENSTTRG00000000613 I 0.927
FMR1 Vicugna pacos ENSVPAG00000008700 I 0.820
Q2KHP9 Xenopus laevis Q2KHP9 I 0.743
AAC59683 Xenopus laevis AAC59683 I 0.735
AAI12953 Xenopus laevis AAI12953 I 0.743
AAI70204 Xenopus laevis AAI70204 I 0.743
P51113 Xenopus laevis P51113 I 0.735
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.735