CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUS
(
Monodelphis domestica
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
ENSMODG00000001889
T25599_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
FUS
M316_0.6
Homo sapiens
GGUG
SELEX
Cook et al.(2011)
637_11098054
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000002300
RRM
280
358
IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIK
ENSMODP00000002300
RanBP ZF
415
446
RAGDWKCPNPTCENMNFSWRNECNQCKAPKPD
Links
Other
RanBP ZF,RRM
family RBPs
Other
Monodelphis domestica
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF24619
Drosophila ananassae
FBgn0101612
N
0.000
GG15699
Drosophila erecta
FBgn0107943
N
0.000
GH16935
Drosophila grimshawi
FBgn0124406
N
0.000
CG9425
Drosophila melanogaster
FBgn0036451
N
0.000
GI13941
Drosophila mojavensis
FBgn0136695
N
0.000
GL26040
Drosophila persimilis
FBgn0163622
N
0.000
GA21777-RA
Drosophila pseudoobscura
FBgn0081762
N
0.000
GD14504
Drosophila simulans
FBgn0186186
N
0.000
GJ13732
Drosophila virilis
FBgn0200953
N
0.000
GK10580
Drosophila willistoni
FBgn0212595
N
0.000
GE22030
Drosophila yakuba
FBgn0239262
N
0.000