CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
TAF15
(
Monodelphis domestica
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
ENSMODG00000019123
T25604_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
FUS
M316_0.6
Homo sapiens
GGUG
SELEX
Cook et al.(2011)
637_11098054
0.703
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000023866
RRM
235
311
IFVQGLGEGVSTDQVGDFFKQIGIIKVSSLPGKPMINLYTDKDTSPKGEATVSFDDPPSAKAIDWFDGKEFHGNIIK
ENSMODP00000023866
RanBP ZF
352
383
KSGDWVCPNPSCGNMNFARRNSCNQCNEPRPE
Links
Other
RanBP ZF,RRM
family RBPs
Other
Monodelphis domestica
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TAF15
Homo sapiens
ENSG00000172660
I
0.919
TAF15
Sus scrofa
ENSSSCG00000017707
I
0.919
TAF15
Canis familiaris
ENSCAFG00000018176
I
0.919
TAF15
Pteropus vampyrus
ENSPVAG00000003952
I
0.919
TAF15
Tursiops truncatus
ENSTTRG00000014145
I
0.919
LOC100071562
Equus caballus
ENSECAG00000000718
I
0.919
TAF15
Bos taurus
ENSBTAG00000006916
I
0.919
ENSCJAG00000002807
Callithrix jacchus
ENSCJAG00000002807
I
0.919
LOC100391580
Callithrix jacchus
ENSCJAG00000014961
I
0.919
Ame_R012008
Ailuropoda melanoleuca
Ame_R012008
I
0.919
TAF15
Gorilla gorilla
ENSGGOG00000005693
I
0.919
TAF15
Sorex araneus
ENSSARG00000012092
I
0.919
TAF15
Procavia capensis
ENSPCAG00000009582
I
0.919
TAF15
Myotis lucifugus
ENSMLUG00000002870
I
0.919
TAF15
Pan troglodytes
ENSPTRG00000009026
I
0.919
TAF15
Oryctolagus cuniculus
ENSOCUG00000002838
I
0.919
TAF15
Macaca mulatta
ENSMMUG00000003305
I
0.919
TAF15
Loxodonta africana
ENSLAFG00000018332
I
0.919
Taf15
Mus musculus
ENSMUSG00000020680
I
0.910
Taf15
Rattus norvegicus
ENSRNOG00000010604
I
0.910
ENSPPYG00000008194
Pongo pygmaeus
ENSPPYG00000008194
I
0.901
TAF15
Cavia porcellus
ENSCPOG00000010259
I
0.883
TAF15
Dasypus novemcinctus
ENSDNOG00000006956
I
0.874
TAF15
Ornithorhynchus anatinus
ENSOANG00000014273
I
0.865
TAF15
Macropus eugenii
ENSMEUG00000006009
I
0.865
TAF15
Gallus gallus
ENSGALG00000002060
I
0.865
TAF15
Meleagris gallopavo
ENSMGAG00000003842
I
0.865
TAF15
Taeniopygia guttata
ENSTGUG00000004702
I
0.865
ENSRNOG00000024836
Rattus norvegicus
ENSRNOG00000024836
I
0.847
ENSCJAG00000002118
Callithrix jacchus
ENSCJAG00000002118
I
0.820
TAF15
Otolemur garnettii
ENSOGAG00000011719
N
0.820
TAF15
Echinops telfairi
ENSETEG00000001337
N
0.811
AAH81071
Xenopus laevis
AAH81071
I
0.766
AAH77935
Xenopus laevis
AAH77935
I
0.748
TAF15
Danio rerio
ENSDARG00000070019
I
0.739
fus
Xenopus tropicalis
ENSXETG00000001951
I
0.721
TAF15
Takifugu rubripes
ENSTRUG00000007798
I
0.721
TAF15
Tetraodon nigroviridis
ENSTNIG00000004057
I
0.721
TAF15
Oryzias latipes
ENSORLG00000011382
I
0.721
AAH44319
Xenopus laevis
AAH44319
I
0.712
AAH74437
Xenopus laevis
AAH74437
I
0.712
FUS
Monodelphis domestica
ENSMODG00000001889
I
0.703
FUS
Pan troglodytes
ENSPTRG00000008038
I
0.703
FUS
Macaca mulatta
ENSMMUG00000019637
I
0.703
Fus
Mus musculus
ENSMUSG00000030795
I
0.703
FUS
Ornithorhynchus anatinus
ENSOANG00000005606
I
0.703
FUS
Pteropus vampyrus
ENSPVAG00000003097
I
0.703
FUS
Oryctolagus cuniculus
ENSOCUG00000021526
I
0.703
FUS
Homo sapiens
ENSG00000089280
D
0.703
LOC100395517
Callithrix jacchus
ENSCJAG00000003169
I
0.703
FUS_BOVIN
Bos taurus
ENSBTAG00000005757
I
0.703
FUS
Anolis carolinensis
ENSACAG00000006776
I
0.703
FUS
Erinaceus europaeus
ENSEEUG00000004934
I
0.703
FUS
Sus scrofa
ENSSSCG00000007759
I
0.703
FUS
Canis familiaris
ENSCAFG00000016862
I
0.703
FUS
Gorilla gorilla
ENSGGOG00000003707
I
0.703